Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30951
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   8.6  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    22   8.6  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 343 DSYSTIFRPLQG 308
           D YSTI RPL G
Sbjct: 144 DRYSTIARPLDG 155


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 201 HYENFFHDQINAKKRDYSIAFLER 272
           +Y N +++  N KK  Y+I ++E+
Sbjct: 312 NYSNNYYNNNNYKKLYYNINYIEQ 335


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 144 ISEAPKEMTEDIAEPATPYHYEN 212
           +S  PK + E     A PY Y+N
Sbjct: 9   VSTMPKSLKEPCDGCAAPYGYKN 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,537
Number of Sequences: 438
Number of extensions: 5718
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)