Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30950
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 2e-35
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 146 2e-35
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 146 2e-35
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 42 7e-04
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 42 7e-04
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 39 0.005
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 30 2.1
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 30 2.1
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 30 2.1
AC024791-32|AAY55887.1| 212|Caenorhabditis elegans Hypothetical... 30 2.1
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.7
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 4.9
AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like se... 28 6.5
AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical... 28 6.5
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 8.6
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (354), Expect = 2e-35
Identities = 66/83 (79%), Positives = 73/83 (87%)
Frame = +1
Query: 7 NITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQ 186
N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQ
Sbjct: 250 NVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQ 309
Query: 187 VIVLNHPGQISNGYTPVLDCHTA 255
VI++NHPGQISNGYTPVLDCHTA
Sbjct: 310 VIIMNHPGQISNGYTPVLDCHTA 332
Score = 131 bits (316), Expect = 6e-31
Identities = 61/87 (70%), Positives = 70/87 (80%)
Frame = +3
Query: 255 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 434
HIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAV
Sbjct: 333 HIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAV 392
Query: 435 RDMRQTVAVGVIKAVNFKEAGGGRVLK 515
RDMRQTVAVGVIK+V + G+V K
Sbjct: 393 RDMRQTVAVGVIKSVEKSDGSSGKVTK 419
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 146 bits (354), Expect = 2e-35
Identities = 66/83 (79%), Positives = 73/83 (87%)
Frame = +1
Query: 7 NITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQ 186
N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQ
Sbjct: 284 NVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQ 343
Query: 187 VIVLNHPGQISNGYTPVLDCHTA 255
VI++NHPGQISNGYTPVLDCHTA
Sbjct: 344 VIIMNHPGQISNGYTPVLDCHTA 366
Score = 131 bits (316), Expect = 6e-31
Identities = 61/87 (70%), Positives = 70/87 (80%)
Frame = +3
Query: 255 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 434
HIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAV
Sbjct: 367 HIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAV 426
Query: 435 RDMRQTVAVGVIKAVNFKEAGGGRVLK 515
RDMRQTVAVGVIK+V + G+V K
Sbjct: 427 RDMRQTVAVGVIKSVEKSDGSSGKVTK 453
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 146 bits (354), Expect = 2e-35
Identities = 66/83 (79%), Positives = 73/83 (87%)
Frame = +1
Query: 7 NITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQ 186
N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQ
Sbjct: 284 NVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQ 343
Query: 187 VIVLNHPGQISNGYTPVLDCHTA 255
VI++NHPGQISNGYTPVLDCHTA
Sbjct: 344 VIIMNHPGQISNGYTPVLDCHTA 366
Score = 131 bits (316), Expect = 6e-31
Identities = 61/87 (70%), Positives = 70/87 (80%)
Frame = +3
Query: 255 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 434
HIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAV
Sbjct: 367 HIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAV 426
Query: 435 RDMRQTVAVGVIKAVNFKEAGGGRVLK 515
RDMRQTVAVGVIK+V + G+V K
Sbjct: 427 RDMRQTVAVGVIKSVEKSDGSSGKVTK 453
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 291 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 467
+D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 468 IKAV 479
+K V
Sbjct: 528 LKVV 531
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/67 (34%), Positives = 38/67 (56%)
Frame = +1
Query: 55 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 234
+ V GDN+ F +K + EL+ G++ S ++ K F A+V+VL H I++GY+
Sbjct: 392 ERVVAGDNIKFKLKGIEENELQGGFII-CSPDSLAKTGRVFDAEVLVLEHRSIIASGYSC 450
Query: 235 VLDCHTA 255
VL +A
Sbjct: 451 VLHIQSA 457
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = +3
Query: 258 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 437
+ C F + +++ G+ + P+ I G +A+V + + +E+F LGR R
Sbjct: 515 VPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFR 574
Query: 438 DMRQTVAVGVIKAV 479
T+A G+++ V
Sbjct: 575 AGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = +3
Query: 258 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 437
+ C F + +++ G+ + P+ I G +A+V + + +E+F LGR R
Sbjct: 533 VPCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFR 592
Query: 438 DMRQTVAVGVIKAV 479
T+A G+++ V
Sbjct: 593 AGGNTIAAGIVEKV 606
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +1
Query: 22 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 201
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 202 HPGQISNGYTPVL 240
HP I Y +L
Sbjct: 479 HPTTIKPNYQAML 491
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 10 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 132
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 296 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 10 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 132
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 10 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 132
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024791-32|AAY55887.1| 212|Caenorhabditis elegans Hypothetical
protein Y47G6A.31 protein.
Length = 212
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 679 FYNLYKVIHNISETFCYDCKLKW 747
F +L K++ N TFCY C W
Sbjct: 44 FQHLPKLLENCGHTFCYSCLFDW 66
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +1
Query: 619 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 726
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 22 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 201
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 202 H 204
H
Sbjct: 509 H 509
>AY741200-1|AAU89102.1| 596|Caenorhabditis elegans STE20-like
serine/threonine kinase protein.
Length = 596
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Frame = -2
Query: 502 PPPASLKLTALMTPTATVCLMSRTAKR-PRGGNSWK--DSTHRGLEGTKLTMAASPDLMD 332
PP S + A +A + A R P +++K +S G T T P
Sbjct: 74 PPQVSSPIAAAAAASAALVAQLNPADRWPTEPSAYKLDESIGVGATATVFTAYCLPRNEK 133
Query: 331 FGLTSVDLPVRRSTFSLISANLQAMWQCGNPILV 230
+ ++L +++ +S +QAM QC +P +V
Sbjct: 134 VAIKCINLEKCQTSVDELSHEIQAMSQCNHPNVV 167
>AL132898-15|CAC14417.2| 596|Caenorhabditis elegans Hypothetical
protein Y59A8B.23 protein.
Length = 596
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Frame = -2
Query: 502 PPPASLKLTALMTPTATVCLMSRTAKR-PRGGNSWK--DSTHRGLEGTKLTMAASPDLMD 332
PP S + A +A + A R P +++K +S G T T P
Sbjct: 74 PPQVSSPIAAAAAASAALVAQLNPADRWPTEPSAYKLDESIGVGATATVFTAYCLPRNEK 133
Query: 331 FGLTSVDLPVRRSTFSLISANLQAMWQCGNPILV 230
+ ++L +++ +S +QAM QC +P +V
Sbjct: 134 VAIKCINLEKCQTSVDELSHEIQAMSQCNHPNVV 167
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -1
Query: 188 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 57
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,931,238
Number of Sequences: 27780
Number of extensions: 381869
Number of successful extensions: 1085
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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