BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30950 (779 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 146 1e-35 At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 146 1e-35 At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 146 1e-35 At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 146 1e-35 At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 105 2e-23 At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 57 1e-08 At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 48 5e-06 At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 35 0.070 At4g27900.2 68417.m04005 expressed protein 32 0.49 At4g27900.1 68417.m04004 expressed protein 32 0.49 At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 32 0.49 At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 30 1.5 At5g42860.1 68418.m05224 expressed protein 25 7.1 >At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha identical to SWISS-PROT:P13905 elongation factor 1-alpha (EF-1-alpha) [Arabidopsis thaliana] Length = 449 Score = 146 bits (355), Expect = 1e-35 Identities = 63/82 (76%), Positives = 77/82 (93%) Frame = +1 Query: 10 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 189 +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QV Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332 Query: 190 IVLNHPGQISNGYTPVLDCHTA 255 I++NHPGQI NGY PVLDCHT+ Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTS 354 Score = 118 bits (285), Expect = 3e-27 Identities = 54/87 (62%), Positives = 69/87 (79%) Frame = +3 Query: 255 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 434 HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAV Sbjct: 355 HIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAV 414 Query: 435 RDMRQTVAVGVIKAVNFKEAGGGRVLK 515 RDMRQTVAVGVIK+V+ K+ G +V K Sbjct: 415 RDMRQTVAVGVIKSVDKKDPTGAKVTK 441 >At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 146 bits (355), Expect = 1e-35 Identities = 63/82 (76%), Positives = 77/82 (93%) Frame = +1 Query: 10 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 189 +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QV Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332 Query: 190 IVLNHPGQISNGYTPVLDCHTA 255 I++NHPGQI NGY PVLDCHT+ Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTS 354 Score = 118 bits (285), Expect = 3e-27 Identities = 54/87 (62%), Positives = 69/87 (79%) Frame = +3 Query: 255 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 434 HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAV Sbjct: 355 HIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAV 414 Query: 435 RDMRQTVAVGVIKAVNFKEAGGGRVLK 515 RDMRQTVAVGVIK+V+ K+ G +V K Sbjct: 415 RDMRQTVAVGVIKSVDKKDPTGAKVTK 441 >At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 146 bits (355), Expect = 1e-35 Identities = 63/82 (76%), Positives = 77/82 (93%) Frame = +1 Query: 10 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 189 +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QV Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332 Query: 190 IVLNHPGQISNGYTPVLDCHTA 255 I++NHPGQI NGY PVLDCHT+ Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTS 354 Score = 118 bits (285), Expect = 3e-27 Identities = 54/87 (62%), Positives = 69/87 (79%) Frame = +3 Query: 255 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 434 HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAV Sbjct: 355 HIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAV 414 Query: 435 RDMRQTVAVGVIKAVNFKEAGGGRVLK 515 RDMRQTVAVGVIK+V+ K+ G +V K Sbjct: 415 RDMRQTVAVGVIKSVDKKDPTGAKVTK 441 >At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha identical to GB:CAA34456 from [Arabidopsis thaliana] (Plant Mol. Biol. 14 (1), 107-110 (1990)) Length = 449 Score = 146 bits (355), Expect = 1e-35 Identities = 63/82 (76%), Positives = 77/82 (93%) Frame = +1 Query: 10 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 189 +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QV Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332 Query: 190 IVLNHPGQISNGYTPVLDCHTA 255 I++NHPGQI NGY PVLDCHT+ Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTS 354 Score = 118 bits (285), Expect = 3e-27 Identities = 54/87 (62%), Positives = 69/87 (79%) Frame = +3 Query: 255 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 434 HIA KF+EI K+DRR+GK E PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAV Sbjct: 355 HIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAV 414 Query: 435 RDMRQTVAVGVIKAVNFKEAGGGRVLK 515 RDMRQTVAVGVIK+V+ K+ G +V K Sbjct: 415 RDMRQTVAVGVIKSVDKKDPTGAKVTK 441 >At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-containing protein similar to SP|P13905 Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis thaliana}; contains Pfam profile PF03143: Elongation factor Tu C-terminal domain Length = 104 Score = 105 bits (253), Expect = 2e-23 Identities = 47/84 (55%), Positives = 63/84 (75%) Frame = +3 Query: 255 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 434 HIA KF+EI K+D RTG E PK +K+ +AAI+N+ P+KP+ VE++ +PPLGRFA+ Sbjct: 21 HIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGRFAI 80 Query: 435 RDMRQTVAVGVIKAVNFKEAGGGR 506 RDMRQTV VGVIK+V K+ G + Sbjct: 81 RDMRQTVGVGVIKSVVKKDPSGAK 104 Score = 42.7 bits (96), Expect = 3e-04 Identities = 16/20 (80%), Positives = 18/20 (90%) Frame = +1 Query: 196 LNHPGQISNGYTPVLDCHTA 255 +NH GQI NGYTPVLDCHT+ Sbjct: 1 MNHLGQIKNGYTPVLDCHTS 20 >At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein, putative similar to EF-1-alpha-related GTP-binding protein gi|1009232|gb|AAA79032 Length = 532 Score = 57.2 bits (132), Expect = 1e-08 Identities = 23/69 (33%), Positives = 41/69 (59%) Frame = +3 Query: 264 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 443 C+ E+K ++D +T K + +K+G A + + + +C+E F +FP LGRF +R Sbjct: 454 CEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTE 513 Query: 444 RQTVAVGVI 470 +T+AVG + Sbjct: 514 GKTIAVGKV 522 Score = 30.3 bits (65), Expect = 1.5 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%) Frame = +1 Query: 19 EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL 198 +V ++ + ++ A PG+N+ + + +++ G+V S NP +F AQ+ +L Sbjct: 371 KVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFVL-SSIVNPVPAVTEFVAQLQIL 429 Query: 199 N--HPGQISNGYTPVLDCH 249 + GY +L H Sbjct: 430 ELLDNAIFTAGYKAILHIH 448 >At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / EF-1-alpha, putative contains similarity to SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha) [Aeropyrum pernix] Length = 667 Score = 48.4 bits (110), Expect = 5e-06 Identities = 22/77 (28%), Positives = 43/77 (55%) Frame = +3 Query: 249 HCHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 428 H A ++ +D +TG+ T+ +P+ + + +A++ + P+CVE+F E LGR Sbjct: 587 HAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRV 646 Query: 429 AVRDMRQTVAVGVIKAV 479 +R +TVA+G + + Sbjct: 647 FLRSSGRTVAMGKVTRI 663 >At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) identical to SWISS-PROT:P17745 elongation factor Tu, chloroplast precursor (EF-Tu) [Arabidopsis thaliana] Length = 476 Score = 34.7 bits (76), Expect = 0.070 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = +1 Query: 22 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 132 V VEM + L EA+ GDNVG ++ + +++RG V Sbjct: 333 VTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMV 369 >At4g27900.2 68417.m04005 expressed protein Length = 261 Score = 31.9 bits (69), Expect = 0.49 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = +3 Query: 327 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 419 PKS+ SG+ + +++V K ++ F +FPP+ Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174 >At4g27900.1 68417.m04004 expressed protein Length = 261 Score = 31.9 bits (69), Expect = 0.49 Identities = 11/31 (35%), Positives = 21/31 (67%) Frame = +3 Query: 327 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 419 PKS+ SG+ + +++V K ++ F +FPP+ Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174 >At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu, putative similar to mitochondrial elongation factor Tu [Arabidopsis thaliana] gi|1149571|emb|CAA61511 Length = 454 Score = 31.9 bits (69), Expect = 0.49 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = +1 Query: 10 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 189 + + V VEM + L GDNVG ++ + ++++RG V +K K F A++ Sbjct: 312 LKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEI 369 Query: 190 IVL 198 VL Sbjct: 370 YVL 372 >At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein similar to cell death suppressor protein lls1 from Zea mays [gi:1935909], Rieske iron-sulfur protein Tic55 from Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske [2Fe-2S] domain Length = 536 Score = 30.3 bits (65), Expect = 1.5 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = +3 Query: 243 LPHCHIAC-KFAEIKEKVDRRTGKSTEVNPKSI 338 +P+ H +F + KEK+DR GK E+N K + Sbjct: 249 VPYAHYGLMRFPKPKEKIDREGGKPLEINVKKL 281 >At5g42860.1 68418.m05224 expressed protein Length = 320 Score = 25.0 bits (52), Expect(2) = 7.1 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 520 RKGHQGQEVARAVNSTIFHTTAILHSPKGFSKEKRATNS 636 R H G++ A T FH+T +L SP G +++S Sbjct: 33 RDSHDGEKTA-----TSFHSTPVLTSPMGSPPHSHSSSS 66 Score = 21.4 bits (43), Expect(2) = 7.1 Identities = 8/13 (61%), Positives = 11/13 (84%) Frame = +1 Query: 376 PSLYV*SPSRNSH 414 P+ +V SPSR+SH Sbjct: 24 PAYFVQSPSRDSH 36 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,920,852 Number of Sequences: 28952 Number of extensions: 350839 Number of successful extensions: 988 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 949 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 988 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1746037600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -