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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30950
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ...   146   1e-35
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ...   146   1e-35
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ...   146   1e-35
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ...   146   1e-35
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-...   105   2e-23
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    57   1e-08
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    48   5e-06
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide...    35   0.070
At4g27900.2 68417.m04005 expressed protein                             32   0.49 
At4g27900.1 68417.m04004 expressed protein                             32   0.49 
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,...    32   0.49 
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote...    30   1.5  
At5g42860.1 68418.m05224 expressed protein                             25   7.1  

>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
           identical to SWISS-PROT:P13905 elongation factor 1-alpha
           (EF-1-alpha) [Arabidopsis thaliana]
          Length = 449

 Score =  146 bits (355), Expect = 1e-35
 Identities = 63/82 (76%), Positives = 77/82 (93%)
 Frame = +1

Query: 10  ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 189
           +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QV
Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332

Query: 190 IVLNHPGQISNGYTPVLDCHTA 255
           I++NHPGQI NGY PVLDCHT+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTS 354



 Score =  118 bits (285), Expect = 3e-27
 Identities = 54/87 (62%), Positives = 69/87 (79%)
 Frame = +3

Query: 255 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 434
           HIA KF+EI  K+DRR+GK  E  PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAV
Sbjct: 355 HIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAV 414

Query: 435 RDMRQTVAVGVIKAVNFKEAGGGRVLK 515
           RDMRQTVAVGVIK+V+ K+  G +V K
Sbjct: 415 RDMRQTVAVGVIKSVDKKDPTGAKVTK 441


>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score =  146 bits (355), Expect = 1e-35
 Identities = 63/82 (76%), Positives = 77/82 (93%)
 Frame = +1

Query: 10  ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 189
           +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QV
Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332

Query: 190 IVLNHPGQISNGYTPVLDCHTA 255
           I++NHPGQI NGY PVLDCHT+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTS 354



 Score =  118 bits (285), Expect = 3e-27
 Identities = 54/87 (62%), Positives = 69/87 (79%)
 Frame = +3

Query: 255 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 434
           HIA KF+EI  K+DRR+GK  E  PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAV
Sbjct: 355 HIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAV 414

Query: 435 RDMRQTVAVGVIKAVNFKEAGGGRVLK 515
           RDMRQTVAVGVIK+V+ K+  G +V K
Sbjct: 415 RDMRQTVAVGVIKSVDKKDPTGAKVTK 441


>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score =  146 bits (355), Expect = 1e-35
 Identities = 63/82 (76%), Positives = 77/82 (93%)
 Frame = +1

Query: 10  ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 189
           +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QV
Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332

Query: 190 IVLNHPGQISNGYTPVLDCHTA 255
           I++NHPGQI NGY PVLDCHT+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTS 354



 Score =  118 bits (285), Expect = 3e-27
 Identities = 54/87 (62%), Positives = 69/87 (79%)
 Frame = +3

Query: 255 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 434
           HIA KF+EI  K+DRR+GK  E  PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAV
Sbjct: 355 HIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAV 414

Query: 435 RDMRQTVAVGVIKAVNFKEAGGGRVLK 515
           RDMRQTVAVGVIK+V+ K+  G +V K
Sbjct: 415 RDMRQTVAVGVIKSVDKKDPTGAKVTK 441


>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score =  146 bits (355), Expect = 1e-35
 Identities = 63/82 (76%), Positives = 77/82 (93%)
 Frame = +1

Query: 10  ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 189
           +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+FT+QV
Sbjct: 273 LTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQV 332

Query: 190 IVLNHPGQISNGYTPVLDCHTA 255
           I++NHPGQI NGY PVLDCHT+
Sbjct: 333 IIMNHPGQIGNGYAPVLDCHTS 354



 Score =  118 bits (285), Expect = 3e-27
 Identities = 54/87 (62%), Positives = 69/87 (79%)
 Frame = +3

Query: 255 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 434
           HIA KF+EI  K+DRR+GK  E  PK +K+GDA +V + P+KP+ VE+F E+PPLGRFAV
Sbjct: 355 HIAVKFSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAV 414

Query: 435 RDMRQTVAVGVIKAVNFKEAGGGRVLK 515
           RDMRQTVAVGVIK+V+ K+  G +V K
Sbjct: 415 RDMRQTVAVGVIKSVDKKDPTGAKVTK 441


>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
           domain-containing protein similar to SP|P13905
           Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
           thaliana}; contains Pfam profile PF03143: Elongation
           factor Tu C-terminal domain
          Length = 104

 Score =  105 bits (253), Expect = 2e-23
 Identities = 47/84 (55%), Positives = 63/84 (75%)
 Frame = +3

Query: 255 HIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAV 434
           HIA KF+EI  K+D RTG   E  PK +K+ +AAI+N+ P+KP+ VE++  +PPLGRFA+
Sbjct: 21  HIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGRFAI 80

Query: 435 RDMRQTVAVGVIKAVNFKEAGGGR 506
           RDMRQTV VGVIK+V  K+  G +
Sbjct: 81  RDMRQTVGVGVIKSVVKKDPSGAK 104



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +1

Query: 196 LNHPGQISNGYTPVLDCHTA 255
           +NH GQI NGYTPVLDCHT+
Sbjct: 1   MNHLGQIKNGYTPVLDCHTS 20


>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 23/69 (33%), Positives = 41/69 (59%)
 Frame = +3

Query: 264 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 443
           C+  E+K ++D +T K  +     +K+G A +  +  +  +C+E F +FP LGRF +R  
Sbjct: 454 CEIIELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTE 513

Query: 444 RQTVAVGVI 470
            +T+AVG +
Sbjct: 514 GKTIAVGKV 522



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +1

Query: 19  EVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVL 198
           +V ++    + ++ A PG+N+   +  +  +++  G+V   S  NP     +F AQ+ +L
Sbjct: 371 KVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFVL-SSIVNPVPAVTEFVAQLQIL 429

Query: 199 N--HPGQISNGYTPVLDCH 249
                   + GY  +L  H
Sbjct: 430 ELLDNAIFTAGYKAILHIH 448


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 22/77 (28%), Positives = 43/77 (55%)
 Frame = +3

Query: 249 HCHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 428
           H   A    ++   +D +TG+ T+ +P+ + +  +A++ +    P+CVE+F E   LGR 
Sbjct: 587 HAKEAATVVKLVAMLDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRV 646

Query: 429 AVRDMRQTVAVGVIKAV 479
            +R   +TVA+G +  +
Sbjct: 647 FLRSSGRTVAMGKVTRI 663


>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
           identical to SWISS-PROT:P17745 elongation factor Tu,
           chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
          Length = 476

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 22  VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 132
           V  VEM  + L EA+ GDNVG  ++ +   +++RG V
Sbjct: 333 VTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMV 369


>At4g27900.2 68417.m04005 expressed protein
          Length = 261

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 327 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 419
           PKS+ SG+ + +++V  K   ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174


>At4g27900.1 68417.m04004 expressed protein
          Length = 261

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 327 PKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 419
           PKS+ SG+ + +++V  K   ++ F +FPP+
Sbjct: 144 PKSVSSGNLSSMDMVEHKDAVIQGFPDFPPV 174


>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
           putative similar to mitochondrial elongation factor Tu
           [Arabidopsis thaliana] gi|1149571|emb|CAA61511
          Length = 454

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +1

Query: 10  ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 189
           + + V  VEM  + L     GDNVG  ++ +  ++++RG V   +K    K    F A++
Sbjct: 312 LKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEI 369

Query: 190 IVL 198
            VL
Sbjct: 370 YVL 372


>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
           similar to cell death suppressor protein lls1 from Zea
           mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
           Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
           [2Fe-2S] domain
          Length = 536

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 243 LPHCHIAC-KFAEIKEKVDRRTGKSTEVNPKSI 338
           +P+ H    +F + KEK+DR  GK  E+N K +
Sbjct: 249 VPYAHYGLMRFPKPKEKIDREGGKPLEINVKKL 281


>At5g42860.1 68418.m05224 expressed protein
          Length = 320

 Score = 25.0 bits (52), Expect(2) = 7.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 520 RKGHQGQEVARAVNSTIFHTTAILHSPKGFSKEKRATNS 636
           R  H G++ A     T FH+T +L SP G      +++S
Sbjct: 33  RDSHDGEKTA-----TSFHSTPVLTSPMGSPPHSHSSSS 66



 Score = 21.4 bits (43), Expect(2) = 7.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 376 PSLYV*SPSRNSH 414
           P+ +V SPSR+SH
Sbjct: 24  PAYFVQSPSRDSH 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,920,852
Number of Sequences: 28952
Number of extensions: 350839
Number of successful extensions: 988
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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