Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30948
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    31   1.4  
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    28   7.5  
04_04_1042 - 30346132-30346285,30346629-30346759,30346867-303469...    28   7.5  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    28   9.9  

>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = -3

Query: 116 VASYRPIALSSVLTKVAEHLVKNRLEWFI 30
           ++ +RPI+L +VL K+A  ++ NRL+ F+
Sbjct: 184 LSKFRPISLCNVLYKIASKVLANRLKLFL 212


>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 152  LVCI*EPCRINDVASYRPIALSSVLTKVAEHLVKNRLE 39
            +V I +P + N V  YRPI+L +   K+   ++  RL+
Sbjct: 973  IVLIQKPGKENTVDGYRPISLQNCSVKILSKVLATRLQ 1010


>04_04_1042 -
           30346132-30346285,30346629-30346759,30346867-30346938,
           30347284-30347370,30347479-30347505,30347777-30347869,
           30348470-30348558,30348649-30348727,30349102-30349231,
           30349344-30349464,30349619-30349726,30349837-30350152
          Length = 468

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 254 IDDEVYQE*EEARSGVQIDKSTALGFSLGFVRLV---GEPVLSKH-KFCKSNISTKCTPL 421
           ++  +Y+E EE R+ VQI       FS    +LV     PVLSKH +F   ++   C  L
Sbjct: 28  LNRRLYKEYEERRALVQILFGLVFAFSCNLFQLVLFEILPVLSKHARFLNWHLDLFCLIL 87

Query: 422 VSVVPQP 442
           + V   P
Sbjct: 88  LLVFVLP 94


>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
            17532062-17533525
          Length = 1626

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 119  DVASYRPIALSSVLTKVAEHLVKNRLEWFIEN 24
            D+  YRPI+L +V+ KV    + NRL   +++
Sbjct: 963  DLKDYRPISLCNVVYKVVSKCLVNRLRPILDD 994


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,515,151
Number of Sequences: 37544
Number of extensions: 340196
Number of successful extensions: 699
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)