Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30948
(799 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript... 47 6e-07
AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcript... 46 1e-06
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript... 41 5e-05
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript... 40 1e-04
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript... 39 2e-04
AJ970245-1|CAI96717.1| 134|Anopheles gambiae putative reverse t... 35 0.003
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript... 35 0.003
AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcript... 34 0.006
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 33 0.014
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein. 31 0.031
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ... 30 0.095
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript... 30 0.095
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript... 24 6.3
>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
protein.
Length = 1154
Score = 47.2 bits (107), Expect = 6e-07
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGS-PTRRTKPNEKPSAVDLSICTP 295
GDFN H +G + G L++++++ L +LN GS PT + +PS +D++ TP
Sbjct: 122 GDFNAWHTEWGSRRNNLRGEELLQMVEVLGLSILNNGSAPTFIGRGAARPSVIDVTFATP 181
Query: 294 DLASSHSW 271
L +W
Sbjct: 182 SLVLHDTW 189
Score = 30.7 bits (66), Expect = 0.054
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 113 ASYRPIALSSVLTKVAEHLVKNRLEWFIEN 24
+SYRP+++ L KV E L+ NRL +E+
Sbjct: 502 SSYRPLSMLDALGKVLEQLILNRLNKHLED 531
>AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcriptase
protein.
Length = 973
Score = 46.4 bits (105), Expect = 1e-06
Identities = 25/72 (34%), Positives = 39/72 (54%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPD 292
GDFN +G +T+ G ++E NL L+N G + N + S +DL+ C+P
Sbjct: 119 GDFNAWATEWGSKSTNARGNAVLEHFSRLNLVLVNVGFCPTFVR-NSRTSIIDLTFCSPA 177
Query: 291 LASSHSWYTSSS 256
LASS +W S++
Sbjct: 178 LASSMNWRVSNA 189
Score = 27.5 bits (58), Expect = 0.51
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 122 NDVASYRPIALSSVLTKVAEHLVKNRLEWFIENNNFIAN 6
+D ++ RP+AL K+ E L+ NRL + E + +++
Sbjct: 465 DDASALRPLALIDNFAKILEILILNRLVVYTEGEHGLSD 503
Score = 23.8 bits (49), Expect = 6.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 178 VKYKLNNADWSAFKNLVESMMLP 110
VK N+A+W A + MM+P
Sbjct: 546 VKNAFNSANWEAIHAALSKMMIP 568
>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
protein.
Length = 1201
Score = 40.7 bits (91), Expect = 5e-05
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTG-SPTRRTKPNEKPSAVDLSICTP 295
GDFN H+ +G G G+ L++ ++ L +LN G PT + S +D+S +
Sbjct: 185 GDFNAWHEEWGSGRNGQRGIELLQTVETLGLSILNQGRKPTFIGRGFAASSVIDVSFASR 244
Query: 294 DLASSHSW 271
++ +W
Sbjct: 245 EIVRPDTW 252
Score = 31.1 bits (67), Expect = 0.041
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 113 ASYRPIALSSVLTKVAEHLVKNRLEWFIENNN 18
+SYRP+ + L KV E L+ NRL IE +
Sbjct: 563 SSYRPLCMLDALGKVLERLILNRLNRHIEQQD 594
>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 39.5 bits (88), Expect = 1e-04
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGS-PTRRTKPNEKPSAVDLSICTP 295
GDFN H +G G L++++ L ++N+G+ PT + S +D+ TP
Sbjct: 142 GDFNAWHTEWGSARNSQRGEDLLQLIQSVQLQVINSGNEPTFIGRGAATSSVIDVCFATP 201
Query: 294 DLASSHSW 271
+A +W
Sbjct: 202 SIARPETW 209
Score = 27.1 bits (57), Expect = 0.67
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 113 ASYRPIALSSVLTKVAEHLVKNR 45
+SYRP+ + L KV E L+ NR
Sbjct: 510 SSYRPLCMLDALGKVLERLILNR 532
>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
protein.
Length = 1222
Score = 38.7 bits (86), Expect = 2e-04
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTG-SPTRRTKPNEKPSAVDLSICTP 295
GD N H +G T+ G +V+++D L +LNTG +PT +PS VD++ +
Sbjct: 120 GDLNAWHTAWGSCRTNAKGEAVVQLVDSLGLEVLNTGTAPTFLGNGVARPSVVDVAFASS 179
Query: 294 DLA 286
+A
Sbjct: 180 SIA 182
>AJ970245-1|CAI96717.1| 134|Anopheles gambiae putative reverse
transcriptase protein.
Length = 134
Score = 34.7 bits (76), Expect = 0.003
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -3
Query: 110 SYRPIALSSVLTKVAEHLVKNRLEWFIENNNFIANS 3
SYRPI+L S L K+ E L+++R+ NNN I S
Sbjct: 1 SYRPISLLSCLGKIFEKLLESRMALHTFNNNIIPKS 36
>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
protein.
Length = 1099
Score = 34.7 bits (76), Expect = 0.003
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -3
Query: 152 LVCI*EPCRINDVA-SYRPIALSSVLTKVAEHLVKNRLEWFIEN 24
LV I +P + + V+ SYRP+ + L KV E L+ NRL F+E+
Sbjct: 474 LVLIPKPGKPSGVSCSYRPLCMLDALGKVLERLILNRLHEFLED 517
>AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcriptase
protein.
Length = 988
Score = 33.9 bits (74), Expect = 0.006
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -3
Query: 113 ASYRPIALSSVLTKVAEHLVKNRLEWFIENNNFIAN 6
+SYRPI L SVL K+ E L++ RL +E+ +++
Sbjct: 488 SSYRPICLLSVLGKILERLIQRRLTTHLESTGGLSD 523
Score = 32.7 bits (71), Expect = 0.014
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 381 LCLLNTGSPTRRTKPNEKPSAVDLSICTPDLASSHSW 271
L LLN G+ + N + S VD+S C+P L ++W
Sbjct: 159 LVLLNQGNQSTWIGANGRNSIVDVSFCSPSLVGDNNW 195
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 32.7 bits (71), Expect = 0.014
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -3
Query: 113 ASYRPIALSSVLTKVAEHLVKNRLEWFIEN 24
+S+RP+ + + L KV E L+ NRL F+EN
Sbjct: 508 SSFRPLGMLNGLGKVLERLILNRLNEFLEN 537
>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
Length = 1212
Score = 31.5 bits (68), Expect = 0.031
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGS-PTRRTKPNEKPSAVDLSICTP 295
GDFN H+ +G ++ G L+E L L+N G+ T S VD++ +
Sbjct: 179 GDFNAWHEEWGSRRSNERGEVLLEASQQLGLLLMNRGNVATFVGNGVATASVVDVTFASS 238
Query: 294 DLASSHSW 271
+A +W
Sbjct: 239 SIAQPSTW 246
Score = 29.1 bits (62), Expect = 0.17
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 110 SYRPIALSSVLTKVAEHLVKNRLEWFIEN 24
SYRP+ + L KV E L+ NRL +E+
Sbjct: 556 SYRPLCMLDALGKVLEKLILNRLHNHLED 584
>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 1222
Score = 29.9 bits (64), Expect = 0.095
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 113 ASYRPIALSSVLTKVAEHLVKNRLEWFIE 27
+SYRP+ + L KV E L+ NRL +E
Sbjct: 548 SSYRPLCMLDALGKVLERLILNRLNEHLE 576
>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
protein.
Length = 1168
Score = 29.9 bits (64), Expect = 0.095
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLN 367
GDFN H +G T G+ L+++ D L LLN
Sbjct: 121 GDFNAMHLDWGSSRTCPKGLELLQLADNLGLVLLN 155
Score = 27.1 bits (57), Expect = 0.67
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 113 ASYRPIALSSVLTKVAEHLVKNRLEWFIEN 24
+S+RPI L K E L+ NRL +IE+
Sbjct: 497 SSFRPICLLDNTGKALERLLLNRLNEYIED 526
>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
protein.
Length = 1209
Score = 23.8 bits (49), Expect = 6.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 113 ASYRPIALSSVLTKVAEHLVKNRLEWFIENNN 18
A YRP+ S L KV ++ +++ + NN
Sbjct: 532 AKYRPLTCLSNLNKVLSSVITQKVKDHCDTNN 563
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 762,793
Number of Sequences: 2352
Number of extensions: 13822
Number of successful extensions: 41
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83992206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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