Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30948
(799 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 46 8e-05
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 45 1e-04
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 44 2e-04
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 38 0.016
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 37 0.037
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 37 0.037
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 37 0.037
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 37 0.037
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 37 0.037
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 37 0.037
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 35 0.15
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 35 0.15
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 35 0.15
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 34 0.26
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 34 0.26
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 33 0.34
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 32 1.0
X95956-1|CAA65194.1| 896|Drosophila melanogaster rotated abdome... 31 2.4
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 30 4.2
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 30 4.2
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 45.6 bits (103), Expect = 8e-05
Identities = 25/67 (37%), Positives = 35/67 (52%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPD 292
GDFN H +G TT+ G +D +L LLN SPT + N + +DL++C+P
Sbjct: 130 GDFNGWHHPWGSPTTNKRGKITHRFIDNMHLILLNDKSPTHFSTHNTY-THIDLTLCSPI 188
Query: 291 LASSHSW 271
LA W
Sbjct: 189 LAPHAKW 195
Score = 35.9 bits (79), Expect = 0.064
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 113 ASYRPIALSSVLTKVAEHLVKNRLEWFIENNNFI 12
+SYRPI+L+ + K+ + ++ RL W + NN I
Sbjct: 506 SSYRPISLNCCIAKILDKIIAKRLWWLVTYNNLI 539
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 45.2 bits (102), Expect = 1e-04
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRT-KPNEKPSAVDLSIC-- 301
GD+N H ++G G L E L + +L TGSPTR P+ PS +D ++
Sbjct: 137 GDWNARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAVYHG 196
Query: 300 TPD-LAS-SHSWYTSSSILAVIIS 235
PD LA+ + SW S L +IIS
Sbjct: 197 IPDHLATITQSWDLDSDHLPLIIS 220
Score = 30.7 bits (66), Expect = 2.4
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -3
Query: 110 SYRPIALSSVLTKVAEHLVKNRL 42
SYRPI+L S L+K+ E L+ NRL
Sbjct: 513 SYRPISLLSSLSKLWERLIANRL 535
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = -3
Query: 122 NDVASYRPIALSSVLTKVAEHLVKNRLEWFIENNNFIANS 3
+D+ SYRPI+L S L K E ++ RL WFI+ +N I+++
Sbjct: 508 SDINSYRPISLLSCLGKTLEKIIAQRLTWFIKRHNLISHN 547
Score = 42.3 bits (95), Expect = 7e-04
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPD 292
GD N ++G T+T G + ++ +L +LN GSPT + N + +D+S+ +P
Sbjct: 134 GDLNSWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPTHLSTHNTF-THIDISLISPQ 192
Query: 291 LASSHSWYTSSSI 253
+A SW S ++
Sbjct: 193 IAHMCSWSISDNL 205
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 37.9 bits (84), Expect = 0.016
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSIC 301
GD+N H+ +GC G L + + ++ ++ TGS T K PSA+D SIC
Sbjct: 164 GDWNAKHRQWGCIRACQRGAALYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFSIC 222
Score = 29.1 bits (62), Expect = 7.4
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3
Query: 122 NDVASYRPIALSSVLTKVAEHLVKNRL 42
N+ SYRPI+L S L+K+ E L+ RL
Sbjct: 565 NEPKSYRPISLLSGLSKMFERLLLKRL 591
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 36.7 bits (81), Expect = 0.037
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSIC 301
GD+N H+ +GC G L E + + ++ TG T K PSA+D SIC
Sbjct: 152 GDWNAKHRQWGCTRACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDFSIC 210
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3
Query: 122 NDVASYRPIALSSVLTKVAEHLVKNRL 42
N+ SYRPI+L S L+K+ E L+ RL
Sbjct: 553 NEPRSYRPISLLSGLSKIFERLLLKRL 579
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 36.7 bits (81), Expect = 0.037
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSIC 301
GD+N H+ +GC G L E + + ++ TG T K PSA+D SIC
Sbjct: 36 GDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 94
Score = 31.9 bits (69), Expect = 1.0
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -3
Query: 125 INDVASYRPIALSSVLTKVAEHLVKNRL 42
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 436 VNDPKSYRPISLLSGLSKMFERLLLKRL 463
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.7 bits (81), Expect = 0.037
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSIC 301
GD+N H+ +GC G L E + + ++ TG T K PSA+D SIC
Sbjct: 152 GDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
Score = 31.9 bits (69), Expect = 1.0
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -3
Query: 125 INDVASYRPIALSSVLTKVAEHLVKNRL 42
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 552 VNDPKSYRPISLLSGLSKMFERLLLKRL 579
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.7 bits (81), Expect = 0.037
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSIC 301
GD+N H+ +GC G L E + + ++ TG T K PSA+D SIC
Sbjct: 152 GDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
Score = 31.9 bits (69), Expect = 1.0
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -3
Query: 125 INDVASYRPIALSSVLTKVAEHLVKNRL 42
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 552 VNDPKSYRPISLLSGLSKMFERLLLKRL 579
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 36.7 bits (81), Expect = 0.037
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSIC 301
GD+N H+ +GC G L E + + ++ TG T K PSA+D SIC
Sbjct: 114 GDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 172
Score = 31.9 bits (69), Expect = 1.0
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -3
Query: 125 INDVASYRPIALSSVLTKVAEHLVKNRL 42
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 514 VNDPKSYRPISLLSGLSKMFERLLLKRL 541
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.7 bits (81), Expect = 0.037
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSIC 301
GD+N H+ +GC G L E + + ++ TG T K PSA+D SIC
Sbjct: 152 GDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDFSIC 210
Score = 31.9 bits (69), Expect = 1.0
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = -3
Query: 125 INDVASYRPIALSSVLTKVAEHLVKNRL 42
+ND SYRPI+L S L+K+ E L+ RL
Sbjct: 552 VNDPKSYRPISLLSGLSKMFERLLLKRL 579
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 34.7 bits (76), Expect = 0.15
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVE-ILDLQNLCLLNTGSPTRRTKPNEK-PSAVDLSIC 301
GD+NC H+++G + G L + IL ++L ++ TG T +K PSA+D +IC
Sbjct: 156 GDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDFAIC 214
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 34.7 bits (76), Expect = 0.15
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVE-ILDLQNLCLLNTGSPTRRTKPNEK-PSAVDLSIC 301
GD+NC H+++G + G L + IL ++L ++ TG T +K PSA+D +IC
Sbjct: 156 GDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDFAIC 214
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 34.7 bits (76), Expect = 0.15
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVE-ILDLQNLCLLNTGSPTRRTKPNEK-PSAVDLSIC 301
GD+NC H+++G + G L + IL ++L ++ TG T +K PSA+D +IC
Sbjct: 156 GDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDFAIC 214
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 33.9 bits (74), Expect = 0.26
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = -3
Query: 110 SYRPIALSSVLTKVAEHLVKNRLEWFIENNN 18
SYRPI+L S L+K+ E L+K RL F++ +N
Sbjct: 537 SYRPISLLSGLSKILEKLIKLRLVKFLDIHN 567
Score = 31.5 bits (68), Expect = 1.4
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPD 292
GDFN H+ + C + G L E+ DL +L PT N K A L +C +
Sbjct: 160 GDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPT-YIPHNHKAKASTLDLCLTN 218
Query: 291 L 289
+
Sbjct: 219 I 219
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 33.9 bits (74), Expect = 0.26
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = -3
Query: 110 SYRPIALSSVLTKVAEHLVKNRLEWFIENNN 18
SYRPI+L S L+K+ E L+K RL F++ +N
Sbjct: 485 SYRPISLLSGLSKILEKLIKLRLVKFLDIHN 515
Score = 31.5 bits (68), Expect = 1.4
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPD 292
GDFN H+ + C + G L E+ DL +L PT N K A L +C +
Sbjct: 108 GDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPT-YIPHNHKAKASTLDLCLTN 166
Query: 291 L 289
+
Sbjct: 167 I 167
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 33.5 bits (73), Expect = 0.34
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKP-NEKPSAVDLSICTP 295
GD+N H ++G G ++ G+ L ++ + L TG PTR P +D ++ T
Sbjct: 136 GDWNASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTRYPYGCRGSPGYIDFAL-TK 194
Query: 294 DLASSHSWYTSSSILAVIISRLSYPLLLDA 205
+ H+ S+++ + L + LDA
Sbjct: 195 GVLGIHA--NISAVVELSSDHLPLVITLDA 222
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 31.9 bits (69), Expect = 1.0
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -3
Query: 119 DVASYRPIALSSVLTKVAEHLVKNRL 42
DV SYRPI+L L K+ E L+ NRL
Sbjct: 313 DVDSYRPISLLPSLGKIMERLILNRL 338
>X95956-1|CAA65194.1| 896|Drosophila melanogaster rotated abdomen
protein protein.
Length = 896
Score = 30.7 bits (66), Expect = 2.4
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -2
Query: 378 CLLNTGSP---TRRTKPNEKPSAVDLSICTPDLASSHSWYTSSSILAVIISRLSYPLLL 211
C LN +P R T P P+A + TP AS ++ S ++ + S++S L L
Sbjct: 81 CHLNAPAPGRVNRHTTPTPTPTATPTPVATPKQASPSAYLRSFALPLTLASQVSVSLAL 139
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 119 DVASYRPIALSSVLTKVAEHLVKNRL 42
DV SYRP +L L K+ E L+ NRL
Sbjct: 511 DVDSYRPTSLLPSLGKIMERLILNRL 536
Score = 29.1 bits (62), Expect = 7.4
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRT-KPNEKPSAVDLSI 304
GD+N H +G + G L E++ +L TG PT + P PSA+D I
Sbjct: 137 GDYNAKHAWWGNPRSCPRGKMLQEVIAHGQYQVLATGEPTFYSYNPLLTPSALDFFI 193
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 29.9 bits (64), Expect = 4.2
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -2
Query: 471 GDFNCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTG-SPTRRTKPNEKPSAVDLSICTP 295
GD N +G ++T G +++ ++L +L LLN G PT + S +D++ +
Sbjct: 124 GDLNAWATEWGSRISNTRGRAVIDAMNLLDLVLLNDGFKPTFNN--DRGTSFIDVTFVSR 181
Query: 294 DLASSHSWYTSSSI 253
L + +W I
Sbjct: 182 VLVAGSNWMVHEDI 195
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,271,645
Number of Sequences: 53049
Number of extensions: 620223
Number of successful extensions: 1482
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3716337612
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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