Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30948
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    44   2e-04
U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical pr...    30   1.7  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = -2

Query: 471 GDFNCHHQMFGC-GTTDTNGVHLVEILDLQ-NLCLLNTGSPTRRTKPNEKPSAVDLSICT 298
           GD N HH  +   G+ DT G  L E++DL  +L + N    TR        S+ D++ICT
Sbjct: 38  GDVNAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVHTRAD--TYSISSPDITICT 95

Query: 297 PDLASSHSWYT 265
            DLA+   W T
Sbjct: 96  ADLATKCHWST 106


>U28971-4|AAK68668.1|  628|Caenorhabditis elegans Hypothetical
           protein B0244.10 protein.
          Length = 628

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 599 INIVGIKIDNISIVSIYLARSSFIILNSINIYSLHLVIHSYY 474
           I  V   ID    + +Y++ + F+I   +N Y L + +++YY
Sbjct: 31  IRNVASSIDVFHWLDVYISTTIFVISGILNFYCLFIALYTYY 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,816,569
Number of Sequences: 27780
Number of extensions: 325878
Number of successful extensions: 737
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)