Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30948
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34760.1 68417.m04934 auxin-responsive family protein auxin-i...    28   8.3  
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low...    28   8.3  

>At4g34760.1 68417.m04934 auxin-responsive family protein
           auxin-induced protein X15, Glycine max, PIR2:JQ1097
          Length = 107

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 140 KCRPISII*FIFHTRYSFLIRRASNRRGYDNREMITAKIDDEVYQ 274
           + R I  I F+ H  +  L++RA    G+D+   +T   D+ V+Q
Sbjct: 56  RSRYIVPISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQ 100


>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
           similarity to DNA polymerase kappa [Mus musculus]
           GI:14279087; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 785

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
 Frame = +2

Query: 209 SNRRGYDNREMITAKIDDEV-YQE*EEARSGVQIDKSTALGFSLGFVRLVGEPVLSKHKF 385
           S    + + E  +A + D V Y+E  +  SG  I     +        L G+ +L K+K 
Sbjct: 479 SGNVSFGSHETSSAHLKDVVEYEERSQIDSGKVIPNQECMKKEERLQILEGDSLLKKYKE 538

Query: 386 CK------SNISTKCTPLVSVVPQ--PNIW 451
           CK       N ++  T  VSV PQ  P  W
Sbjct: 539 CKPDTSHSMNDNSNATEAVSVFPQTEPLYW 568


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,613,314
Number of Sequences: 28952
Number of extensions: 295049
Number of successful extensions: 621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)