Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30947
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 3   QKEQLQKEFGVQLANIEKEMKSREKEAEERLRNADAENKTLTKKLEQQTSKS 158
           + EQL + +      I+KE K    E   R ++   EN  + K  E    KS
Sbjct: 446 ENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIFKDKS 497


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 57   EMKSREKEAEERLRNADAENKTLTKKLEQQTSKSSE 164
            +  SRE+E     +  D + KTLT   +Q   +  +
Sbjct: 1421 DRSSREREVHNGGQQEDRDRKTLTSAPQQPQQQQQQ 1456


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 54  KEMKSREKEAEERLRNADAENKTLTKKLEQQTSKS 158
           K ++ RE++          E + L ++LEQ T+++
Sbjct: 98  KSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQT 132


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = -2

Query: 553 YCHIIKYCPISQNINILIYVI--*LPRRPR 470
           YC I K C +S N  I + V     PRR R
Sbjct: 86  YCGIGKECELSPNSTIAVCVCMRKCPRRHR 115


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 177 GRPPARCSYSFVVPVSS 127
           G PP   SY+  VP  S
Sbjct: 96  GTPPEAVSYNVAVPTKS 112


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 177 GRPPARCSYSFVVPVSS 127
           G PP   SY+  VP  S
Sbjct: 96  GTPPEAVSYNVAVPTKS 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,748
Number of Sequences: 438
Number of extensions: 1744
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)