Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30946
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0V649 Cluster: Ig-like, group 1 precursor; n=1; Delfti...    36   0.79 
UniRef50_A5KE57 Cluster: Dynein heavy chain, putative; n=3; cell...    34   2.4  
UniRef50_UPI00006CFCAF Cluster: cation channel family protein; n...    32   9.7  

>UniRef50_A0V649 Cluster: Ig-like, group 1 precursor; n=1; Delftia
           acidovorans SPH-1|Rep: Ig-like, group 1 precursor -
           Delftia acidovorans SPH-1
          Length = 1532

 Score = 35.9 bits (79), Expect = 0.79
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = -2

Query: 252 DVSGRTILSAGSSTVTSFNNGLISASRTKIAANFS 148
           +V GRT+LS G +T TS  NGL + + + ++AN S
Sbjct: 679 NVQGRTLLSVGGATTTSGTNGLTNPANSALSANES 713


>UniRef50_A5KE57 Cluster: Dynein heavy chain, putative; n=3; cellular
            organisms|Rep: Dynein heavy chain, putative - Plasmodium
            vivax
          Length = 5274

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +1

Query: 160  GDFGATGGDETIVEGGHGGATSTQYGPPGHVAVPFIKRKTVF*ALVVVQN--IYLFLS*S 333
            G+ G  GG + +  GG   +T+         ++P+  RK +F + V V+N    ++L   
Sbjct: 3274 GEVGGVGGGDALASGGLNVSTANSGNTANAASLPYDPRKNIFTSFVSVRNGLDKMYLGVK 3333

Query: 334  RTKQLINVIVENCVSYH 384
            +   L  V+ E    Y+
Sbjct: 3334 KFHALKEVLAEKLAEYN 3350


>UniRef50_UPI00006CFCAF Cluster: cation channel family protein; n=1;
           Tetrahymena thermophila SB210|Rep: cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 1223

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = +1

Query: 439 FSRKLSLYHGVA*KYSFHRRYSFHLLLVHSVSVIRKEV------FCCYCYVMYKYSF 591
           F  K   +H V  KY  + ++S  + L+ +++++  EV       CC  Y++ KY++
Sbjct: 428 FFFKFPQFHNVVNKYKENNQFSIKINLIFNITILLTEVIQFGHFLCCAWYILGKYNY 484


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,148,583
Number of Sequences: 1657284
Number of extensions: 8502442
Number of successful extensions: 25585
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25515
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)