Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30946
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    26   5.1  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   6.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   6.7  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   6.7  

>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -2

Query: 240 RTILSAGSSTVTSFNNGLISASRTKIAANFSSAMASSEIATSDG 109
           +T+ ++ +ST++ F+    SAS +    + SS+  S   A S+G
Sbjct: 200 KTVSASSNSTISGFSTSTTSASSSAAGNSSSSSYTSYSGAVSNG 243


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 356 SSSKIVFPTTICLLVAVERLVNSHLP-PRSAVSCHCIMAWPKSI 484
           + SK+  P  +  ++A+   V+ H+P P S+V  + + A P S+
Sbjct: 36  TGSKVELPFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSV 79


>SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 243  GRTILSAGSSTVTSFNNGLISASRTKI 163
            G T+++     VTSF+  L+  S+TKI
Sbjct: 924  GSTVITLFEPNVTSFDEDLLRNSKTKI 950


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 231 LSAGSSTVTSFNNGLISASRTKIAANFSSAMASSEIATS 115
           L++ SS  +S  N   SAS T  +   SSA +SS  ++S
Sbjct: 85  LTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSS 123


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 359 SSKIVFPTTICLLVAVERLVNSHLPPRSAVSCHCIMAWPKSIRFIV 496
           SS+I    T+ L    E   +++ PPRS +SC  +       R+IV
Sbjct: 415 SSEIGIFQTVKLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIV 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,524
Number of Sequences: 5004
Number of extensions: 36286
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)