Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30946
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0403 - 3133568-3134440,3135131-3135494,3136341-3136408,313...    29   4.0  
11_04_0193 + 14712993-14713229,14713297-14713385,14713494-147135...    27   9.2  
08_02_0581 + 18986084-18986176,18986284-18986668,18986779-189868...    27   9.2  

>03_01_0403 -
           3133568-3134440,3135131-3135494,3136341-3136408,
           3137184-3137857,3138093-3138105
          Length = 663

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -2

Query: 273 SFNEGD---RDVSGRTILSAGSSTVTSFNNGLISASRTKIAANFSSAMASSEIA 121
           SFN  D   R V   ++ S GS +     NG  +A+  +I   FS+  ASS +A
Sbjct: 232 SFNVNDMKMRLVESGSVFSDGSCSFDQLTNGSRAAASGRIVLCFSTTTASSGVA 285


>11_04_0193 +
           14712993-14713229,14713297-14713385,14713494-14713539,
           14713674-14713758,14715288-14715412,14715786-14715947
          Length = 247

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 401 AVERLVNSHLPPRSAVSCHCIMAWPKSI 484
           A    +NSH+ P+ A  C CI  +  SI
Sbjct: 162 AAHAWINSHIRPKCAFGCSCIAVYCGSI 189


>08_02_0581 +
           18986084-18986176,18986284-18986668,18986779-18986861,
           18986966-18987110,18987823-18987951,18988047-18988171,
           18988261-18988419,18988503-18988665,18988750-18988875,
           18989110-18989471,18989572-18989772,18989873-18989982,
           18990079-18990163,18990298-18990426,18990505-18990610,
           18990688-18990776,18990885-18991184
          Length = 929

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 335 EQSN*LTSSSKIVFPTTIC-LLVAVERLVNSHL-PPRSAVSCHCIMAWP 475
           ++ N  T++   VFP  +C +LV ++ ++N  +  P+    C C+ A P
Sbjct: 31  QRRNMKTNACITVFPVFLCVILVVLQGVINHEINKPKYQCGCACVDAAP 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,410,643
Number of Sequences: 37544
Number of extensions: 244433
Number of successful extensions: 723
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)