Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30946
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56224| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)                    29   4.1  
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)                      27   9.4  
SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)                      27   9.4  

>SB_56224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 798

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +1

Query: 160 GDFGATGGDETIVEGGHGGATSTQYGPPGHVAVPFI 267
           G  G TGG  T   GG GG TST  G  G      +
Sbjct: 196 GGVGTTGGS-TGAAGGGGGGTSTSTGSSGSTGTSMV 230


>SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)
          Length = 782

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +1

Query: 160 GDFGATGGDETIVEGGHGGATSTQYGPPGHVAVPFI 267
           G  G TGG  T   GG GG TST  G  G      +
Sbjct: 242 GGVGTTGGS-TGAAGGGGGGTSTSTGSSGSTGTSMV 276


>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
          Length = 186

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +1

Query: 160 GDFGATGGDETIVEGGHGGATSTQYGPPG 246
           G  GATGG      GGHGGAT    G  G
Sbjct: 99  GGGGATGGGGGAT-GGHGGATGGGVGATG 126



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +1

Query: 160 GDFGATGGDETIVEGGHGGATSTQYGPPG 246
           G  GATGG      GGHGGAT    G  G
Sbjct: 113 GHGGATGGGVGAT-GGHGGATGGHGGATG 140


>SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)
          Length = 766

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 437 RSAVSCHCIMAWPKSIRFIVAIHSTC 514
           RS+++   + AW + IR  V +H+TC
Sbjct: 98  RSSITTQHLHAWSEKIREAVLLHNTC 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,116,661
Number of Sequences: 59808
Number of extensions: 273281
Number of successful extensions: 817
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)