Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30946
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125459-4|AAD12839.1| 287|Caenorhabditis elegans Hypothetical ... 29 2.0
AF125459-3|AAX88817.1| 277|Caenorhabditis elegans Hypothetical ... 29 2.0
AF125459-2|AAX88818.1| 414|Caenorhabditis elegans Hypothetical ... 29 2.0
Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81109-6|CAB03253.2| 179|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z78539-2|CAB01729.2| 410|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven transme... 29 3.6
AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical ... 29 3.6
AL031630-9|CAA20988.1| 345|Caenorhabditis elegans Hypothetical ... 28 6.2
>AF125459-4|AAD12839.1| 287|Caenorhabditis elegans Hypothetical
protein Y25C1A.7b protein.
Length = 287
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1
Query: 151 EISGDFGATGGDETIVEGGHGGATSTQYGPPGHV 252
E SG FG GD I+ GG GATS+ P G V
Sbjct: 26 EQSGAFGGNIGDRNILVGGSVGATSSA-APSGGV 58
>AF125459-3|AAX88817.1| 277|Caenorhabditis elegans Hypothetical
protein Y25C1A.7a protein.
Length = 277
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1
Query: 151 EISGDFGATGGDETIVEGGHGGATSTQYGPPGHV 252
E SG FG GD I+ GG GATS+ P G V
Sbjct: 16 EQSGAFGGNIGDRNILVGGSVGATSSA-APSGGV 48
>AF125459-2|AAX88818.1| 414|Caenorhabditis elegans Hypothetical
protein Y25C1A.7c protein.
Length = 414
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = +1
Query: 151 EISGDFGATGGDETIVEGGHGGATSTQYGPPGHV 252
E SG FG GD I+ GG GATS+ P G V
Sbjct: 16 EQSGAFGGNIGDRNILVGGSVGATSSA-APSGGV 48
>Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical protein
F13D2.1 protein.
Length = 1342
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Frame = -2
Query: 414 SRSTATSKQMVVGNTIFDDDVNQLLCSALTQ--K*IDILYYHQSLKDCFSFNEGDRDVSG 241
S T T+ +G F++D++ ++ T+ K + + + +Q +DC S+ G RD++
Sbjct: 760 SLKTITAYIPKLGRKDFNEDLSDIIDVENTEDKKYLLVSFMYQVSRDCSSYRSGLRDMT- 818
Query: 240 RTILSAGSSTVTSFNNGLISASRTKIAANFSSAMASSEIATSD 112
+ + RT A F + A++E+ SD
Sbjct: 819 -KSFGKLHKYFYELDESAVQDRRTSAAIAFMATNATAELMRSD 860
>Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical protein
F13D2.1 protein.
Length = 1342
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Frame = -2
Query: 414 SRSTATSKQMVVGNTIFDDDVNQLLCSALTQ--K*IDILYYHQSLKDCFSFNEGDRDVSG 241
S T T+ +G F++D++ ++ T+ K + + + +Q +DC S+ G RD++
Sbjct: 760 SLKTITAYIPKLGRKDFNEDLSDIIDVENTEDKKYLLVSFMYQVSRDCSSYRSGLRDMT- 818
Query: 240 RTILSAGSSTVTSFNNGLISASRTKIAANFSSAMASSEIATSD 112
+ + RT A F + A++E+ SD
Sbjct: 819 -KSFGKLHKYFYELDESAVQDRRTSAAIAFMATNATAELMRSD 860
>Z81109-6|CAB03253.2| 179|Caenorhabditis elegans Hypothetical
protein R10D12.12 protein.
Length = 179
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -2
Query: 387 MVVGNTIFDDDVNQLLCSA 331
+ VG+T+F+D +NQ+LC A
Sbjct: 5 VTVGSTLFEDLINQVLCEA 23
>Z78539-2|CAB01729.2| 410|Caenorhabditis elegans Hypothetical
protein C31E10.3 protein.
Length = 410
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 423 LFTSRSTATSKQMVVGNTIFDDDVNQLLCSALTQK*IDILYYHQSLKDC 277
LF+ +A +V N+ D LLC D++Y H++LKDC
Sbjct: 129 LFSMDFSAIFPIQIVNNSRLDAS---LLCENNNYAAFDVIYVHKNLKDC 174
>AF304119-1|AAG50232.1| 326|Caenorhabditis elegans seven
transmembrane protein protein.
Length = 326
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 508 HLLLVHSVSVIRKEVFCCYCYVMYKYSFFY 597
HL+L+ S+ V+R ++C Y Y FY
Sbjct: 179 HLILIGSILVLRSTLYCVLLYKTYNGKPFY 208
>AF068718-6|AAC17769.2| 326|Caenorhabditis elegans Hypothetical
protein R01B10.5 protein.
Length = 326
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 508 HLLLVHSVSVIRKEVFCCYCYVMYKYSFFY 597
HL+L+ S+ V+R ++C Y Y FY
Sbjct: 179 HLILIGSILVLRSTLYCVLLYKTYNGKPFY 208
>AL031630-9|CAA20988.1| 345|Caenorhabditis elegans Hypothetical
protein Y38H6C.10 protein.
Length = 345
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 396 SKQMVVGNTIFDDDVNQLLCSALTQK*ID 310
+K+MV+GN F+D N CS + K +D
Sbjct: 35 AKRMVIGNLSFEDRNNIRQCSTVEMKLVD 63
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,579,706
Number of Sequences: 27780
Number of extensions: 207644
Number of successful extensions: 583
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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