Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30945
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    30   0.019
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   2.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   5.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   9.0  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 29.9 bits (64), Expect = 0.019
 Identities = 21/89 (23%), Positives = 41/89 (46%)
 Frame = +3

Query: 288 RHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 467
           +H+Q Q++  ++ +   +   P+    +P PV+ +   +  S  S+P      H  +   
Sbjct: 130 QHNQQQSVEKSSKLKNKSA--PILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSPN 187

Query: 468 YPKYEFNYSVADGHPATTSPNKKSATVTH 554
           Y K + + S      +T+SP   SAT T+
Sbjct: 188 YIKPQLHVSTG----STSSPTIASATYTN 212


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 583 DGSIRTVEYTAD 618
           DGS+R V YTAD
Sbjct: 227 DGSLRGVRYTAD 238


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = -1

Query: 229 TLQGQHGKPQGQRGKLQEPQRHNEHRGFRH 140
           T Q  +    G   + Q PQ H  H   +H
Sbjct: 158 TTQSMNNHHMGHHMQEQHPQHHQPHHQQQH 187


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = -1

Query: 229 TLQGQHGKPQGQRGKLQEPQRHNEHRGFRH 140
           T Q  +    G   + Q PQ H  H   +H
Sbjct: 160 TTQSMNNHHMGHHMQEQHPQHHQPHHQQQH 189


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 260 RVRVSPEHHPS*SAPDYQLRCSRSQVSRR 346
           R R SP+  P  S P Y  R   ++V+++
Sbjct: 472 RQRTSPQLSPMSSLPPYPNRTQITEVTQQ 500


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,239
Number of Sequences: 336
Number of extensions: 2407
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)