Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30945
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    30   0.26 
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    27   3.2  
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    26   4.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   7.3  

>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +3

Query: 333 KLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK----IVAHQAEEIAYPKYEFNYSVA 500
           K A ++  T    P P   ++AP+A   HS P         +++A ++ +P  E ++S  
Sbjct: 119 KRATSSQETKRDRPLPNIRNSAPSATRSHSTPCVAPGYLRTSNEAADVVFPHEEAHFSNH 178

Query: 501 DGHPATTSPNKK 536
           +  P   SP +K
Sbjct: 179 NPKPNNGSPLQK 190


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 423 APVAKIVAHQAEEIAYPKYEFNYSVADGHPATTSPNKKSATVTHKGLILLPRS*R 587
           +PV+    HQ+   +Y     NY++ +     +     S+ V   G++LLPRS R
Sbjct: 152 SPVSAPSRHQST-YSYKGGPLNYNLRNASRTRSHQTLPSSNVNKTGVLLLPRSSR 205


>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 300 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAH 449
           PQT   ++P+  +A +TPV+  + P P T    P  ++   AP+    AH
Sbjct: 222 PQTTQDSSPILTMAPSTPVSVGSTP-PSTPSVLP--IAKQLAPMNVCKAH 268


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 109  QQMSSELVPPGDQLWTPPQMRTVLLIWK 26
            Q MS +  P    +WT P +R   L+W+
Sbjct: 1154 QDMSLKEGPLSKVVWTRPMIRLFCLVWR 1181


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 264  SVSPQNIIRHDQPQTINYAAPVAKLAVATPVTYHAA-PAPVTYHAAPAA 407
            S  P + I  +   T+N      + A+A PV   A  PAPV   A PAA
Sbjct: 861  STKPASAITPETKSTVNQIMSGGE-ALAAPVAVPAPIPAPVAEPAPPAA 908


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,766
Number of Sequences: 5004
Number of extensions: 38484
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)