Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30945
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785... 40 0.002
02_02_0256 - 8362374-8363003 31 0.61
07_01_0069 + 505291-505327,505726-505956,506317-506652,507025-50... 30 1.9
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 29 2.5
12_02_0441 + 19115990-19116478 29 4.3
11_06_0494 + 24316007-24316365,24317307-24317706 29 4.3
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591... 29 4.3
02_05_0092 + 25749070-25750638 29 4.3
02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448 29 4.3
10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901... 28 5.7
05_05_0065 - 22069798-22069890,22070878-22071160,22071240-220713... 28 5.7
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 28 5.7
02_05_0174 - 26486955-26487728 28 5.7
02_02_0315 + 8872199-8872815,8873141-8873243,8873346-8873405,887... 28 5.7
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 28 7.6
05_05_0148 - 22729469-22730116,22730215-22730589 28 7.6
04_03_0314 - 14238620-14240128 28 7.6
>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
40978941-40979434,40979516-40979609,40979686-40979779,
40980342-40980444,40980550-40980601,40980716-40980756,
40980881-40980960,40981490-40981936,40982378-40982554,
40983205-40983803,40983886-40985040
Length = 1227
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/93 (30%), Positives = 46/93 (49%)
Frame = +3
Query: 273 PQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQ 452
PQ++I + P T + AP+ L V H +T + P AV+ H P +AH+
Sbjct: 911 PQSMISVN-PST-QHVAPMNNLLSRATVHQHTQSYALT--SDPVAVAVHHQPAVNKLAHE 966
Query: 453 AEEIAYPKYEFNYSVADGHPATTSPNKKSATVT 551
+ I++P + SVA+ H + TS +S+ T
Sbjct: 967 VQSISHPAVSHS-SVAESHASYTSYTWQSSVAT 998
>02_02_0256 - 8362374-8363003
Length = 209
Score = 31.5 bits (68), Expect = 0.61
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 282 IIRHDQPQTI-NYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAE 458
++R DQ T+ AAP A + V P P P+ H PAA SAP +VA
Sbjct: 58 MVRDDQEPTVARPAAPSAVVVVVAP----PLPPPLPIHRVPAAAVQPSAP--PVVADDVA 111
Query: 459 EIAY 470
+AY
Sbjct: 112 LLAY 115
>07_01_0069 +
505291-505327,505726-505956,506317-506652,507025-507372,
507735-508594,508902-508971,509157-509371,509477-509537,
509606-509715,510644-510694,510794-510916
Length = 813
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -3
Query: 650 LWTTALKPLCASAVYSTVLMEPSASWKEYEPFMRHRRGLLVGTCCRRMTVSY*VV 486
+W T L + SA+Y + W E EP + R+ C R +VS VV
Sbjct: 737 IWRTLLLQMMFSAMYRSTHSLFGLGWMEQEPIIEDRKVAESRGACSRCSVSVCVV 791
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 294 DQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHS-APVAKIVAHQAEEIAY 470
DQP + AP + A P + PAP ++PA Y+S P A VA Q A
Sbjct: 59 DQPPSAPSYAPPPQYAGYAPPYNNPNPAPYPPESSPAPAPYYSYPPTAAGVATQHAPAAE 118
Query: 471 P 473
P
Sbjct: 119 P 119
>12_02_0441 + 19115990-19116478
Length = 162
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = +3
Query: 279 NIIRHDQPQTINYAAPVAKLAV---ATPVTYHAAPAPVTYHAAPAAVSYHSAPVA 434
N+ D + Y P+ V +H P PV Y A SY+ APVA
Sbjct: 40 NVCLRDLAGVLGYRCPLCNFTVHRQGCRRPHHHHPPPVAYTQHQRASSYNQAPVA 94
>11_06_0494 + 24316007-24316365,24317307-24317706
Length = 252
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 534 SCWDLLSPDDRQLLSS*TRI*GRQSPRLDE 445
SCWDL DD QLL+ RI + P +E
Sbjct: 212 SCWDLCVDDDAQLLAKCARIRTLKLPPSEE 241
>03_06_0327 -
33158131-33158315,33158586-33158639,33159149-33159180,
33159275-33159369,33159466-33159539,33159643-33159778,
33159874-33159937,33160017-33160079,33160160-33160299,
33160487-33160627,33160747-33160868,33160947-33161112,
33161194-33161313,33161580-33161651,33161787-33161843,
33162036-33162152,33162231-33162369,33162794-33162900,
33162972-33163081,33163172-33163305,33163397-33163546,
33163635-33163840,33166123-33166818
Length = 1059
Score = 28.7 bits (61), Expect = 4.3
Identities = 25/88 (28%), Positives = 36/88 (40%)
Frame = +3
Query: 300 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKY 479
P TI P A A AAPAP + AP+A + K+ + +A P
Sbjct: 111 PVTIRAPPPSHSSAPAPYQPAAAAPAPSSSSTAPSATALAKEFEQKLFVSET-ALAPPAA 169
Query: 480 EFNYSVADGHPATTSPNKKSATVTHKGL 563
+ + A A+ +K A V+ KGL
Sbjct: 170 VASAAAAPAGEASVESDKDLAPVSKKGL 197
>02_05_0092 + 25749070-25750638
Length = 522
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 291 HDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYH 392
H +P ++ AAP+ V P T APAPV H
Sbjct: 379 HQEPAMVDTAAPMDIHNVQEPDTAAPAPAPVVEH 412
>02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448
Length = 495
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = -1
Query: 247 GLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRILPQQMSSELVPPGDQL 68
G+EQH QG+ G QG+R ++P++H H + R P+ ++ VP +
Sbjct: 422 GIEQH---QGKLGVDQGKRPAPEKPRQHWPHVDQLAPLADGSRSTPESRVADPVPITETS 478
Query: 67 WTPPQMRTVLLIWKT 23
+ ++ L W T
Sbjct: 479 PRHSRRASLSLKWTT 493
>10_08_0132 +
15087274-15087797,15089544-15089732,15090048-15090186,
15090454-15090594,15091420-15091569,15091908-15092011,
15092258-15092432,15092714-15092823,15092906-15093073,
15093180-15093345,15093771-15094049,15094445-15094543,
15094619-15094676,15095145-15095336,15095693-15095724,
15096023-15096117,15096321-15096426
Length = 908
Score = 28.3 bits (60), Expect = 5.7
Identities = 25/73 (34%), Positives = 33/73 (45%)
Frame = -1
Query: 253 NSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRILPQQMSSELVPPGD 74
+SG+ +LQG GKPQ QRG+ + H G R G P ++ S PP
Sbjct: 274 HSGVASGYSLQG--GKPQQQRGEFGRLRFLPRHAGVARRRRRRGGRSPFRLVSPSHPP-P 330
Query: 73 QLWTPPQMRTVLL 35
T P M T+ L
Sbjct: 331 LSKTEPMMDTLEL 343
>05_05_0065 -
22069798-22069890,22070878-22071160,22071240-22071335,
22071456-22071558,22071633-22071693,22071816-22071887,
22072315-22072383,22072459-22072482,22073278-22073316,
22073862-22073951,22074063-22074095
Length = 320
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 241 EQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRH 140
E H L G HG P +R + Q RH+E H
Sbjct: 275 EFHKLLNGNHGDPTDRRQRAQMNGRHDEDINHAH 308
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 28.3 bits (60), Expect = 5.7
Identities = 27/88 (30%), Positives = 35/88 (39%)
Frame = +3
Query: 267 VSPQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVA 446
V P N H + +Y + A A HAAPA A P + + AP A
Sbjct: 536 VPPANPSVHPEQAVPSYVSSQAPQPAAAGPQTHAAPASFASQAPPTSFA-SQAPQAGAPY 594
Query: 447 HQAEEIAYPKYEFNYSVADGHPATTSPN 530
QA F +S A HPA T+P+
Sbjct: 595 PQAAS------TFPHSQA-SHPAATNPS 615
>02_05_0174 - 26486955-26487728
Length = 257
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Frame = +3
Query: 318 AAPVAKLAVATPVTYHAAPAPV--------TYHAA---PAAVSYHSAPVAKIVAHQAEEI 464
AAP LA A PVT AP P ++ AA PA +HS P+ +VA A
Sbjct: 6 AAPALSLAEAAPVTAVLAPCPTPSRTFRRRSWVAAICRPALKCHHSRPLTAVVAAAAAAA 65
Query: 465 A 467
A
Sbjct: 66 A 66
>02_02_0315 +
8872199-8872815,8873141-8873243,8873346-8873405,
8873558-8873632,8873718-8873792,8873876-8873956,
8874466-8874657,8874762-8874947,8875047-8875094
Length = 478
Score = 28.3 bits (60), Expect = 5.7
Identities = 27/93 (29%), Positives = 41/93 (44%)
Frame = +3
Query: 261 ESVSPQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKI 440
+ V+P+ ++ D+ + I A + + P AAPA T AAPAA + +AP A
Sbjct: 325 KKVAPKELV--DEIKEIGQALLPSTGTKSQPAITEAAPA--TAEAAPAAATATAAPPAAP 380
Query: 441 VAHQAEEIAYPKYEFNYSVADGHPATTSPNKKS 539
V + E A P S +P P+ S
Sbjct: 381 VEETSTEAA-PAEPTPLSPYTNYPDLKPPSSPS 412
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 315 YAAPVAKLAVATPVTYHA-APAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 467
Y APV+ ++ PV + AP PV+Y++ P+ + A+ + A ++
Sbjct: 580 YYAPVSASGISIPVDATSIAPVPVSYYSYPSVTMAATGEAAEPSGYYAASVS 631
>05_05_0148 - 22729469-22730116,22730215-22730589
Length = 340
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = +3
Query: 366 AAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEFNYSVADGHPATTSPNKKSAT 545
+AP P Y + P+ + S ++ H+ ++ F+YS A P S+T
Sbjct: 41 SAPPPSYYSSLPSFYIHRSTSSHSLLHHRLSDLLNSNAAFSYSSAPACQLQPLPPVSSST 100
Query: 546 VTHKGLIL 569
+ G +L
Sbjct: 101 SSSSGDLL 108
>04_03_0314 - 14238620-14240128
Length = 502
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 324 PVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 443
P + A TP PAP +A +A S S P K+V
Sbjct: 30 PPSTAAPPTPTAVRCTPAPAAAPSAASAASARSIPPPKLV 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,939,740
Number of Sequences: 37544
Number of extensions: 298111
Number of successful extensions: 1106
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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