Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30945
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5157| Best HMM Match : Gp5_C (HMM E-Value=1.3)                      35   0.051
SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1)                    33   0.16 
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)                  30   1.9  
SB_18642| Best HMM Match : CsrA (HMM E-Value=8.7)                      30   1.9  
SB_6938| Best HMM Match : Nodulin-like (HMM E-Value=0.17)              30   1.9  
SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)                29   4.4  
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)                29   4.4  
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   7.7  

>SB_5157| Best HMM Match : Gp5_C (HMM E-Value=1.3)
          Length = 205

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
 Frame = +3

Query: 261 ESVSPQNIIRHDQPQTINY---AAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPV 431
           ++V P  + ++  P T+      A V +  +   VT +  PA VT +  PA V+ +  P 
Sbjct: 97  KNVMPATVTQNVMPATVTQNVMPATVTQNVMPATVTQNVMPATVTQNVMPATVTQNVMP- 155

Query: 432 AKIVAHQAEEIAYPKYEFNYSVADGHPATTSPNKKSATVTHKGL 563
           A +  +   E             +  PAT + N   ATVT  G+
Sbjct: 156 ATVTQNVMPETVTQNVMPATVTQNVMPATVTQNVMPATVTQNGM 199



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
 Frame = +3

Query: 261 ESVSPQNIIRHDQPQTINY---AAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPV 431
           ++V P  + ++  P T+      A V +  +   VT +  PA VT +  PA V+ +  P 
Sbjct: 7   QNVMPATVTQNVMPATVTQNVMPATVTQNCMPATVTQNVMPATVTQNVMPATVTQNVMP- 65

Query: 432 AKIVAHQAEEIAYPKYEFNYSVADGHPATTSPNKKSATVT 551
           A +  +            +    +G PAT + N   ATVT
Sbjct: 66  ATVTQNVMPATVTQNGMPSTVTQNGMPATVTKNVMPATVT 105



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +3

Query: 321 APVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEFNYSVA 500
           A V +  +   VT +  PA VT +  PA V+ +  P    V          +     +V 
Sbjct: 3   ATVTQNVMPATVTQNVMPATVTQNVMPATVTQNCMPAT--VTQNVMPATVTQNVMPATVT 60

Query: 501 DG-HPATTSPNKKSATVTHKGL 563
               PAT + N   ATVT  G+
Sbjct: 61  QNVMPATVTQNVMPATVTQNGM 82



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +3

Query: 321 APVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEFNYSVA 500
           A V +  +   VT +  PA VT +  PA V+ +  P    V          +     +V 
Sbjct: 12  ATVTQNVMPATVTQNVMPATVTQNCMPATVTQNVMPAT--VTQNVMPATVTQNVMPATVT 69

Query: 501 DG-HPATTSPNKKSATVTHKGL 563
               PAT + N   +TVT  G+
Sbjct: 70  QNVMPATVTQNGMPSTVTQNGM 91


>SB_23827| Best HMM Match : DUF809 (HMM E-Value=9.1)
          Length = 159

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +3

Query: 261 ESVSPQNIIRHDQPQTINYAA-PVAKLAVATP--VTYHAAPAPVTYHAAPAAVSYHSAPV 431
           + V+P ++  +  P  + Y   P       TP  VTY+  P  VTY      V+Y   P 
Sbjct: 33  DCVTPYHVTYYVTPYHVTYCVTPYHVTYCVTPYHVTYYVTPYHVTYSVTLYHVTYCVTPY 92

Query: 432 AKIVAHQAEEI 464
           A    H+ +EI
Sbjct: 93  ATAATHKKKEI 103


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 556  KGSYSFHEADGSIRTVEYTADAHNGFNAVVH 648
            KGSY  H+ DG  RT+EY +    G+    H
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGYLPPAH 1772


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/67 (31%), Positives = 26/67 (38%)
 Frame = +3

Query: 345  ATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEFNYSVADGHPATTS 524
            A P T + A APV   AAPA      APV    A      A   +    + A  +PA   
Sbjct: 1323 AAPATAYPAQAPVNPTAAPATAYPAQAPVNPTAAPATAYPAQSPFNPTAAPATAYPAQAP 1382

Query: 525  PNKKSAT 545
             N  + T
Sbjct: 1383 ANPTAGT 1389


>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
          Length = 941

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = -1

Query: 244 LEQHGTLQGQHG-----KPQGQRGKLQEPQRHNEHRGFRHGVRCSGRILPQQMSSELVPP 80
           +   G  Q +HG     K QG  G+    Q  +E    RH ++ S     ++MS E  P 
Sbjct: 640 ISSQGMQQSEHGIFGSRKRQGNGGQPSSDQLPSEINIARHAIKISEESEKRKMSEERGPS 699

Query: 79  GDQL 68
           GD L
Sbjct: 700 GDGL 703


>SB_18642| Best HMM Match : CsrA (HMM E-Value=8.7)
          Length = 293

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = +3

Query: 264 SVSPQNIIRHDQPQTINYAAPVAKLAVATP---VTYHAAPAPVTYHAAPAAVSYHSAPVA 434
           ++ P  II    P  I    P + + V  P   + YHAA      HA     ++H+A   
Sbjct: 156 TLPPSYIIVTLPPSLITVTLPPSNITVTLPPSFINYHAATTQYDRHATTKLYNHHAA--T 213

Query: 435 KIVAHQAEEIAYPKY 479
           K+    A  I Y ++
Sbjct: 214 KLYNRHAATILYNRH 228


>SB_6938| Best HMM Match : Nodulin-like (HMM E-Value=0.17)
          Length = 484

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 78  PGGTSSLLICWGSILP 125
           PGG SS L+ WG++LP
Sbjct: 242 PGGKSSFLVSWGAVLP 257


>SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 926

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 10  ERIKMFSKSIVLCAFVAVSKAGLLAEPVHYSSAGAVSSQSIVRHDES 150
           E + M  +S V C  +A S   L   P+HY++  A S  ++   DE+
Sbjct: 200 ELVSMILESSVGCKLIAQSGTRLERTPLHYAALKAASLNAVYDVDEN 246


>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 828

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
 Frame = +3

Query: 303 QTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEI-AYPKY 479
           +T N +  + K    TPVT   A +   Y +     S HS+P A  +  Q     + P  
Sbjct: 73  ETPNLSVGMLKNPSPTPVTSRPASSRSGYSSKSGTKSIHSSPTAMYLGFQRTRCKSAPPR 132

Query: 480 EFNYSVADGHPATTSPNKKSATVTHKG 560
            F Y      P T S    S+    +G
Sbjct: 133 HFRY--VPKRPQTASSGAGSSRPVSRG 157


>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
          Length = 156

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 318 AAPVAKLA-VATPVTYHAAPA-PVTYHAAPAAVSYHSAPVA 434
           AAP A++   A  VT  AAPA PVT  AAPA    H    A
Sbjct: 90  AAPAARVTPTAARVTPTAAPAAPVTPTAAPAPAQSHEEVAA 130


>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1918

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 267 VSPQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAA 407
           VSP    +H+ P+    + P       +P +YH+AP+P  Y A P+A
Sbjct: 68  VSPHRTYQHNLPRGSQSSVP------PSPHSYHSAPSPSRY-AGPSA 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,722,505
Number of Sequences: 59808
Number of extensions: 311764
Number of successful extensions: 1106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)