Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30945
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    33   0.14 
U41027-2|AAV28335.1|  447|Caenorhabditis elegans Hypothetical pr...    33   0.18 
U41027-1|AAV28336.1|  480|Caenorhabditis elegans Hypothetical pr...    33   0.18 
AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like ...    30   1.3  
AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like ...    30   1.3  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81529-5|CAB04296.1|  288|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U40952-12|AAA81745.1|  297|Caenorhabditis elegans Hypothetical p...    29   2.9  
AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical p...    28   6.8  
U88308-13|AAK68215.1|  534|Caenorhabditis elegans Uncoordinated ...    28   6.8  
CU457740-4|CAM36334.1|  735|Caenorhabditis elegans Hypothetical ...    28   6.8  
AF104858-1|AAC79090.1|  390|Caenorhabditis elegans putative RNA-...    28   6.8  
AF063007-5|AAD47125.1|  712|Caenorhabditis elegans Prion-like-(q...    28   6.8  
Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +3

Query: 267 VSPQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSY------HSAP 428
           V+P +I +  QP    Y APVA +A          PAP+  H AP   ++      H AP
Sbjct: 359 VAPAHITQEIQPAPQPYVAPVAPVAQEIHTIQPIQPAPI--HPAPLQPAHVVQETAHVAP 416

Query: 429 VAKIVAHQ 452
             K+VA +
Sbjct: 417 ETKVVAEE 424


>U41027-2|AAV28335.1|  447|Caenorhabditis elegans Hypothetical
           protein R08E3.4a protein.
          Length = 447

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 506 SSGDNKSQQEVRDGDA*RAHTPSTKLTAPSEPLSTP 613
           SSG+  + Q +  GD  ++ TPS + T PS+P  +P
Sbjct: 35  SSGEMSNSQTIEWGDGIQSSTPSPRSTPPSDPTPSP 70


>U41027-1|AAV28336.1|  480|Caenorhabditis elegans Hypothetical
           protein R08E3.4b protein.
          Length = 480

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 506 SSGDNKSQQEVRDGDA*RAHTPSTKLTAPSEPLSTP 613
           SSG+  + Q +  GD  ++ TPS + T PS+P  +P
Sbjct: 35  SSGEMSNSQTIEWGDGIQSSTPSPRSTPPSDPTPSP 70


>AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform b protein.
          Length = 453

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = +3

Query: 258 AESVSPQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHA-APAAVSYHSAPVA 434
           AE+ +P  +   + P  +   APV       PV     PAPV     AP A +   +   
Sbjct: 282 AETEAPVVVAETEAPAVVETEAPVVIEETEAPVVVEETPAPVVEETQAPVAAAKEESTYD 341

Query: 435 KIVAHQ 452
            IV  Q
Sbjct: 342 DIVEEQ 347


>AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like
           (grd related) protein16, isoform a protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
 Frame = +3

Query: 258 AESVSPQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHA-APAAVSYHSAPVA 434
           AE+ +P  +   + P  +   APV       PV     PAPV     AP A +   +   
Sbjct: 222 AETEAPVVVAETEAPAVVETEAPVVIEETEAPVVVEETPAPVVEETQAPVAAAKEESTYD 281

Query: 435 KIVAHQ 452
            IV  Q
Sbjct: 282 DIVEEQ 287


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 29/84 (34%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = +3

Query: 306 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQ--AEEI--AYP 473
           T N A+ VA+ AV TP     APAP        A S   AP     A +  A E   A P
Sbjct: 250 TANAASAVAEPAVETP-----APAPAAEETPAPATSSEEAPAPAPTAEETPAPETVSAAP 304

Query: 474 KYEFNYSVADGHPATT-SPNKKSA 542
           +   +Y  A G  AT  +P+ ++A
Sbjct: 305 EAANSYDSAGGDAATAPAPSSEAA 328


>Z81529-5|CAB04296.1|  288|Caenorhabditis elegans Hypothetical
           protein F35E8.7 protein.
          Length = 288

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 318 AAPVAKLAVATPV--TYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQA 455
           + P A  + A P   T   APA VT  AAPAAV+  +A     VA  A
Sbjct: 192 SGPTATTSTAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAA 239


>U40952-12|AAA81745.1|  297|Caenorhabditis elegans Hypothetical
           protein C03B1.1 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 29  PNQ*YCAHLWRCPKLVSWRNQFTTH-LLGQYPPRASYAMTKATV 157
           P Q  C +LW C K+  W   F +H  L Q   +  Y   + TV
Sbjct: 152 PIQMVCMNLWTCEKIEIWYRDFYSHRYLEQVDGKEKYDEDQYTV 195


>AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical
           protein K08D12.6 protein.
          Length = 668

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 321 APVAKLAVATPVTYHAA-PAPVTYHAAPAAVS-YHSAPVAKIVAHQAEEIAY 470
           APV +  VA P    AA PAP    AAPAA +   +AP A    ++++  AY
Sbjct: 108 APVEQAPVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAY 159



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 321 APVAKLAVATPVTYHAA-PAPVTYHAAPAAVS-YHSAPVAKIVAHQAEEIAY 470
           APV +  VA P    AA PAP    AAPAA +   +AP A    ++++  AY
Sbjct: 436 APVEQAPVAVPAPAPAAAPAPDCGSAAPAAAAPAAAAPAATDSGYRSKRNAY 487


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -1

Query: 220 GQHGKPQGQRGKLQEPQRHNEHRGFRHGVR 131
           G HG P       + P RH  H    HG R
Sbjct: 395 GHHGPPHHHHHDGRSPSRHGHHHHHHHGCR 424


>Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical
           protein T06E4.10 protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = +3

Query: 321 APVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIA 467
           APV   A A    Y  APAPV   A   A +Y  APVA  +   A  +A
Sbjct: 83  APVVAAAPALAPAY--APAPVVAAAPAFAPAYAPAPVASPMIAAAPALA 129


>U88308-13|AAK68215.1|  534|Caenorhabditis elegans Uncoordinated
           protein 11, isoform d protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +3

Query: 294 DQPQTINYAAPVAK---LAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEI 464
           DQ ++IN A P A     A   P T  A P  +    + AA         ++V+HQA   
Sbjct: 355 DQKKSINSANPFANDVASAAPAPATSAAQPDLLDMFQSSAAPLLQCNRKLQMVSHQAAPF 414

Query: 465 AYP 473
            YP
Sbjct: 415 GYP 417


>CU457740-4|CAM36334.1|  735|Caenorhabditis elegans Hypothetical
           protein C50E10.4 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +3

Query: 321 APVAKLAVATPVTYHAAP----APVTYHAAPAA 407
           AP A++A  TPV    AP    AP T  AAPAA
Sbjct: 256 APAAEVAPETPVAAPMAPAAPAAPATPEAAPAA 288


>AF104858-1|AAC79090.1|  390|Caenorhabditis elegans putative
           RNA-binding protein PRP-1 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 306 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPK 476
           T+    P  + +V   V   +APAP+++ AA AA ++    + K  A   +  A P+
Sbjct: 196 TVTEVQPPVEESVTATVPTSSAPAPISF-AAVAAAAHRKEALRKHQAQNPQPAAPPR 251


>AF063007-5|AAD47125.1|  712|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 59
           protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 306 TINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPK 476
           T+    P  + +V   V   +APAP+++ AA AA ++    + K  A   +  A P+
Sbjct: 196 TVTEVQPPVEESVTATVPTSSAPAPISF-AAVAAAAHRKEALRKHQAQNPQPAAPPR 251


>Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical
           protein F13B12.3 protein.
          Length = 717

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 106 QMSSELVPPGDQLWTPPQMRTVLLIWKTF*FFL 8
           ++ S L+   ++LW P  +  +  I KTF FFL
Sbjct: 575 KLYSRLIEYEEKLWIPAPLSLLFYILKTFCFFL 607


>U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical
           protein F53A9.7 protein.
          Length = 85

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 268 TDSAENSGLEQHGTLQGQHGKPQGQRGKLQEPQRHNE--HRGFRHG 137
           TD   +  ++ H   +  HG+  G    +Q  + H+E  H G  HG
Sbjct: 38  TDGGHHGHVDTHHHEESHHGEHHGGHHGVQHYESHHESHHHGGHHG 83


>U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical
           protein F13H8.5 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 241 EQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHGVRCSGRILPQQ 104
           EQH      +G PQ Q+ + Q+PQ+  +   F+   +   + L QQ
Sbjct: 25  EQHQQFNNFNGFPQFQQQQFQQPQQFQQQPQFQQQQQNYQQFLAQQ 70


>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 300 PQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVA 434
           P  +   AP+   A A    Y  AP P    AAPA     +AP A
Sbjct: 52  PMMMAPPAPLPAYAPAPLPAYAPAPLPAPVFAAPAPAPVFAAPFA 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,816,805
Number of Sequences: 27780
Number of extensions: 229811
Number of successful extensions: 856
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)