Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30945
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.37 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.37 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.4  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   4.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 471 PKYEFNYSVADGHPATTSPNKKSATVTHKGLILLP 575
           P    ++S ADGHP    P  +   + +  L+LLP
Sbjct: 58  PPLNIDWSTADGHPVNDVPGVR-RVLRNGTLVLLP 91


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 471 PKYEFNYSVADGHPATTSPNKKSATVTHKGLILLP 575
           P    ++S ADGHP    P  +   + +  L+LLP
Sbjct: 58  PPLNIDWSTADGHPVNDVPGVR-RVLRNGTLVLLP 91


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 555 YASPSRTSCWDLLSPDDR 502
           YASP  TS +D  SP+ +
Sbjct: 132 YASPMSTSSYDPYSPNSK 149


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 282 CSGETRTRQRIVD 244
           C GET T Q+I+D
Sbjct: 33  CVGETGTSQKIID 45


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 91  LVPPGDQLWTPP 56
           + P GD LW PP
Sbjct: 133 IYPNGDVLWVPP 144


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 309 INYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHS 422
           I  A  V K  +   V       P+T   +PAAVSY S
Sbjct: 81  IKTALSVCKSLIERQVYAVVVSHPLTGDLSPAAVSYTS 118


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 149 LSSWRTMLWEDT 114
           L SW T++W D+
Sbjct: 91  LHSWMTLMWTDS 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,341
Number of Sequences: 438
Number of extensions: 2765
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)