Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30945
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    32   0.39 
At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    30   1.2  
At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    30   1.2  
At1g69890.1 68414.m08043 expressed protein  contains Pfam profil...    30   1.2  
At3g12410.1 68416.m01546 hypothetical protein                          29   2.1  
At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate reductoi...    28   4.8  
At3g12440.1 68416.m01549 extensin family protein contains simila...    28   4.8  
At1g27430.1 68414.m03343 GYF domain-containing protein contains ...    28   4.8  
At2g15260.1 68415.m01740 zinc finger (C3HC4-type RING finger) fa...    28   6.3  
At1g64140.1 68414.m07266 expressed protein similar to putative d...    28   6.3  
At5g56890.1 68418.m07099 protein kinase family protein contains ...    27   8.4  
At4g13390.1 68417.m02092 proline-rich extensin-like family prote...    27   8.4  
At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger) fa...    27   8.4  

>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 318 AAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAP 428
           +AP  +     PV +H+ P P+ +H+ P  V + S P
Sbjct: 697 SAPCEESPPPAPVVHHSPPPPMVHHSPPPPVIHQSPP 733



 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 321 APVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 443
           APV   +   P+ +H+ P PV + + P     +  P+  ++
Sbjct: 707 APVVHHSPPPPMVHHSPPPPVIHQSPPPPSPEYEGPLPPVI 747


>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +3

Query: 270 SPQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK 437
           SP   ++H  P  +  + P      + P  Y + P PV Y++ P        PV K
Sbjct: 45  SPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPVYK 100



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 270 SPQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAP 428
           SP   ++H  P  +  + P      + P  Y + P PV Y + P  V ++S P
Sbjct: 61  SPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPV-YKSPPPPVKHYSPP 112


>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +3

Query: 270 SPQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAK 437
           SP   ++H  P  +  + P      + P  Y + P PV Y++ P        PV K
Sbjct: 45  SPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPVYK 100



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 270 SPQNIIRHDQPQTINYAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAP 428
           SP   ++H  P  +  + P      + P  Y + P PV Y + P  V ++S P
Sbjct: 61  SPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPPPPV-YKSPPPPVKHYSPP 112


>At1g69890.1 68414.m08043 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 279

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
 Frame = +3

Query: 276 QNIIRHDQPQTIN---YAAPVAKLAVATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVA 446
           +N + HD    ++   +   V ++ V T  T   APAPVT        SY  +PV++  +
Sbjct: 123 RNSVTHDTSHVLDSFLWDVDVVEILVGT-TTPAPAPAPVTTPPPHRRPSYTYSPVSRTSS 181

Query: 447 HQAEE---IAYPKYE---FNYSVADGHPATTSPNKKSATVTHKG 560
            ++EE   +  PK E     Y +AD        +     +T KG
Sbjct: 182 EKSEEELTVPPPKSEGRPIYYHIADEEGHVEEESAVGYALTFKG 225


>At3g12410.1 68416.m01546 hypothetical protein
          Length = 230

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 348 TPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIV 443
           TP +Y++ P P  Y+A P  + Y+S   A I+
Sbjct: 65  TPFSYYSDPRPNNYYADPPPIRYYSDNPADIL 96


>At5g62790.1 68418.m07882 1-deoxy-D-xylulose 5-phosphate
           reductoisomerase (DXR) nearly identical to
           1-deoxy-d-xylulose-5-phosphate reductoisomerase
           [Arabidopsis thaliana] GI:4886307; contains Pfam profile
           PF02670: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
          Length = 477

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 172 QRHNEHRGFRHGVRCSGRILPQQ 104
           +R N+ RGF  GV+CS ++  QQ
Sbjct: 36  RRRNQGRGFGKGVKCSVKVQQQQ 58


>At3g12440.1 68416.m01549 extensin family protein contains
           similarity to Swiss-Prot:Q38913 extensin 1 precursor
           (AtExt1) (AtExt4) [Arabidopsis thaliana]
          Length = 353

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 348 TPVTYHAAPAPVTYHAAPAAVSYHS 422
           +PV+YH+  +PVT+H     V Y S
Sbjct: 73  SPVSYHSDSSPVTHHYDSPPVCYRS 97


>At1g27430.1 68414.m03343 GYF domain-containing protein contains Pfam
            profile: PF02213 GYF domain
          Length = 1531

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 238  QHGTLQGQHGKPQGQRGKLQ-EPQRHNEHR 152
            Q+G  Q Q+G+ Q Q G+LQ EP R  E++
Sbjct: 926  QYGQKQSQYGQMQSQHGQLQSEPIRSLEYQ 955


>At2g15260.1 68415.m01740 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 362

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 605 STVLMEPSASWKEYEPFMRHRRGLLVGTCCRRMTVSY*VVELVFRVGNLLG 453
           STV + PS  W+  +PF+  R  L+V     RM      +E+  R GN  G
Sbjct: 250 STVQLNPSDVWESTQPFLSSRHHLMVEDEIYRMIYGD-RIEMGERSGNHRG 299


>At1g64140.1 68414.m07266 expressed protein similar to putative
           disease resistance protein GB:CAB40943 GI:4586107 from
           [Arabidopsis thaliana]; weak similarity to Loricrin
           (Swiss-Prot:P23490) [Homo sapiens]
          Length = 646

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 444 AHQAEEIAYPKYEFNYSVADGHPATTSPNKKSATVTHKGL 563
           A + EE +    E ++S+  G+   T+ NKK A +  KGL
Sbjct: 94  ARETEEASSMDIELDFSLHLGNEKPTASNKKPANLKMKGL 133


>At5g56890.1 68418.m07099 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 1113

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/70 (28%), Positives = 25/70 (35%)
 Frame = +3

Query: 345 ATPVTYHAAPAPVTYHAAPAAVSYHSAPVAKIVAHQAEEIAYPKYEFNYSVADGHPATTS 524
           A P    A P PV  H A       SAP     +H       P  +   S    HP++ S
Sbjct: 280 AAPANETAKPLPVFPHKASPPSIAPSAPKFNRHSHHTSPSTTPPPDSTPSNVHHHPSSPS 339

Query: 525 PNKKSATVTH 554
           P   S+   H
Sbjct: 340 PPPLSSHHQH 349


>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 429

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 261 ESVSPQNIIRHDQPQTINYAAPVAKLAVATPVT--YHAAPAPVTYHAAPAAVSYHSAP 428
           E  SP     ++ P   +Y +P  K+   +P     +++P P TY++    V Y S P
Sbjct: 275 EFKSPPPPYIYNSPPPPSYYSPSPKIDYKSPPPPYVYSSPPPPTYYSPSPRVDYKSPP 332


>At1g22500.1 68414.m02811 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 381

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 241 EQHGTLQGQHGKPQGQRGKLQEPQRHNEHRGFRHG 137
           E H  L       QG +G+L  PQ  +  RGFR G
Sbjct: 256 EIHDQLVNSSLGKQGSKGQLALPQERSSVRGFRTG 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,217,493
Number of Sequences: 28952
Number of extensions: 217649
Number of successful extensions: 1038
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)