Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30944
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.0  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   6.2  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    26   6.2  
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.2  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   8.2  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    25   8.2  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   8.2  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 533 TPCWKLTAQCARLSTPLTTTTGFNAVVS 616
           T CW L+AQ   +S PLT    F+ V S
Sbjct: 560 TQCWHLSAQTQLVSNPLTFRGIFSLVFS 587


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 413 HHEEEYAHPKYDFAYSVADGHSGDNKSQHESRTATL 520
           HH  +Y H  +D  +   D HS D+ S   S  A L
Sbjct: 17  HHTHDYDHHNHD--HHGHDHHSHDSSSNSSSEAARL 50


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 390 PTKYLSPATMKKNMLTLNTTSLTPWLTDTVATTSLSTSP 506
           P+K     T + N  + +  S+TP+L  T  +  LS+SP
Sbjct: 253 PSKQAIMGTRQPNATSGSPLSVTPFLQKTSTSIGLSSSP 291


>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 399 YLSPATMKKNMLTLNTTSL 455
           Y+S AT+K N+L+LNT ++
Sbjct: 93  YVSEATLKGNVLSLNTFNI 111


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -2

Query: 587  SSAVYSTLRTEPSASNKVYSPCTASPCGTRAETCCRH 477
            SS + + +   P   N + S C  +PC T ++   +H
Sbjct: 1382 SSCLKNNIEIIPDKINSLCSDCLKNPCATISKAVTQH 1418


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 511 GDAVHGEYTLLEADGS 558
           GD++HG Y++LE  G+
Sbjct: 403 GDSIHGLYSILETSGA 418


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +3

Query: 381  SLQPTKYLSPATMKKNMLTLNTTSLT--PWLTDTVATTSLSTS 503
            S +P  + S +T+ +++ ++NT SLT  P  + + +TTS  TS
Sbjct: 953  STEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTS 995


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,323
Number of Sequences: 5004
Number of extensions: 30798
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)