Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30944
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1507 - 30646168-30646254,30646350-30646490,30648109-306482...    33   0.23 
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078           30   2.1  
08_01_0303 + 2493388-2493954                                           29   2.8  
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053...    29   4.9  
04_04_1541 + 34249778-34249882,34249964-34250115,34250225-342503...    28   6.5  
11_06_0577 - 25158833-25162864                                         28   8.6  
08_02_0602 + 19183549-19184919                                         28   8.6  

>06_03_1507 -
           30646168-30646254,30646350-30646490,30648109-30648202,
           30648445-30648509,30648934-30649176,30649442-30649499,
           30649957-30650037,30650323-30650533,30650975-30651141,
           30651216-30651268,30651600-30651681,30651765-30651914,
           30652027-30652111,30652189-30652393,30652502-30652573,
           30652911-30653456
          Length = 779

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +2

Query: 431 AHPKYDFAYSVADGHSGDNKSQHESRTATLCTANTP--CWKLTAQCARLSTPL 583
           + P YD   +V D     +K +  +RT  LC    P   W  TA C R+S  L
Sbjct: 538 SRPDYDDELAVLDQLHDFSKKKFSARTVLLCDQALPEGAWYCTADCVRISETL 590


>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
          Length = 455

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 587 SSAVYSTLRTEPSASNKVYSPCTASPCGTRAETCCRHCVRQPRS 456
           +S+V    R++PS S+ + SPC ASPC   +   C      P S
Sbjct: 389 ASSVGPLFRSQPS-SDSLQSPCKASPCRDASFELCWQAEHVPPS 431


>08_01_0303 + 2493388-2493954
          Length = 188

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 116 RCSERRRPQPTSNVVRVRDLQWPLLVQC 33
           RCS RRRP P +  V +   + P  V+C
Sbjct: 30  RCSRRRRPSPLTTTVALTRRRSPAAVRC 57


>04_03_0795 -
           19704354-19704464,19705152-19705214,19705298-19705378,
           19705468-19705623,19705711-19705785,19706477-19706587,
           19707206-19707304,19707453-19707546,19707779-19707838,
           19709262-19709334,19711448-19711490,19711533-19711606,
           19711985-19712075,19712170-19712214,19712533-19712589,
           19713440-19713544,19713817-19713932,19714625-19714634,
           19714810-19714920,19715502-19715594,19715664-19715690,
           19715736-19715798,19716326-19716451,19716812-19716949,
           19717164-19717832,19717949-19718123,19718269-19718450
          Length = 1015

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = +1

Query: 16  QNCCFKHCTSSG------HCRSLTRTTLLVGCGRLLSEHRPS 123
           Q   + HCT  G       C+ LT +  L GC  LL EHR S
Sbjct: 119 QEGLYVHCTLDGVLESNWACQLLTESMTLFGCMALLMEHRIS 160


>04_04_1541 +
           34249778-34249882,34249964-34250115,34250225-34250350,
           34251868-34252030,34252601-34252678,34252749-34252847,
           34253045-34253188,34253344-34253446,34255303-34255646,
           34255727-34255891
          Length = 492

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 566 LRTEPSASNKV-YSPCTASPCGTRAETCCRHCVRQPRSKR 450
           +  EPS S K+ Y P    P G+R E  CR  +R P  +R
Sbjct: 388 VENEPSLSAKLNYPPLPEEPKGSR-ELLCRVAIRLPDGRR 426


>11_06_0577 - 25158833-25162864
          Length = 1343

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 414 TMKKNMLTLNTTSLTPWLTDTVATTSLSTSPARRRCARRIH 536
           T+ +  LT       PWL      T LST P R R A++IH
Sbjct: 78  TLYRRDLTPPEPGFWPWLRHV--PTWLSTVPTRHRLAKKIH 116


>08_02_0602 + 19183549-19184919
          Length = 456

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +2

Query: 341 AGPVHYAAPEARVIAPAHKVLVAGHHEEE---YAHPKYDFAYSVADGHSGDNKSQHE 502
           AG +  A  +  V +    +L++  HE     YA+ + D A   ADGH   ++SQ E
Sbjct: 208 AGVLDDACADLDVTSSNQPLLLSAEHEVVDALYANQEADAAILHADGHHNQDESQRE 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,092,033
Number of Sequences: 37544
Number of extensions: 258826
Number of successful extensions: 871
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)