Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30944
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37999| Best HMM Match : RVT_1 (HMM E-Value=7.5e-10)                 32   0.41 
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           30   2.2  
SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_37999| Best HMM Match : RVT_1 (HMM E-Value=7.5e-10)
          Length = 874

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +2

Query: 455 YSVADGHSGDNKSQHESRTATLCTANTPCWKLTAQCARLSTPLTTTTGFNAV 610
           Y++A  H  D  + H  RT  +  A+ P W    QC   S  L  T   N V
Sbjct: 774 YAIARSHQQDETAVHGCRTRVIDCASVPSWPDWCQCVYASVLLKFTFMKNGV 825


>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 332  YAAAGPVHYAAPEARVIAPAHKVLVAGHHEEEYAHPKYDFAYSVADGHS 478
            YA  G ++  A  +  I P H    +GH E++ AHP    +YSV   ++
Sbjct: 909  YATQGALNPCAQGSLSIGP-HTGSSSGHSEQKGAHPPRSISYSVQGSYN 956


>SB_35264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -3

Query: 595 RGGRQRCTQPCALSRQLP 542
           RGGR RCT    LSR LP
Sbjct: 534 RGGRLRCTSTTPLSRTLP 551


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,472,116
Number of Sequences: 59808
Number of extensions: 267365
Number of successful extensions: 1221
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)