Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30944
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49890.1 68414.m05593 expressed protein contains Pfam domain,...    29   3.1  
At5g63870.3 68418.m08019 serine/threonine protein phosphatase (P...    28   7.2  
At5g63870.2 68418.m08018 serine/threonine protein phosphatase (P...    28   7.2  
At5g63870.1 68418.m08017 serine/threonine protein phosphatase (P...    28   7.2  
At3g26890.2 68416.m03365 expressed protein                             27   9.5  
At3g26890.1 68416.m03364 expressed protein                             27   9.5  

>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 659

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +3

Query: 369 KPE*SLQPTKYLSPATMKKNMLTLNTTSLTPWLTDTVATTSLSTSPARRRCARR 530
           +P     P++YLSP+       T  TT+ T   T T +++S S+S A  R ++R
Sbjct: 30  RPRGKQVPSRYLSPSPSHSVSSTTTTTTTT---TTTTSSSSSSSSSAILRTSKR 80


>At5g63870.3 68418.m08019 serine/threonine protein phosphatase (PP7)
           identical to PP7 [Arabidopsis thaliana] GI:2791900
          Length = 301

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 374 RVIAPAHKVLVAGHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRTATLCTANTP 538
           +V+ P    L+ G+HE +Y    Y F   V   + GD K +H  R    C    P
Sbjct: 132 KVLMPDRVYLLRGNHESKYCTSMYGFEKEVLTKY-GD-KGKHVYRKCLGCFEGLP 184


>At5g63870.2 68418.m08018 serine/threonine protein phosphatase (PP7)
           identical to PP7 [Arabidopsis thaliana] GI:2791900
          Length = 413

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 374 RVIAPAHKVLVAGHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRTATLCTANTP 538
           +V+ P    L+ G+HE +Y    Y F   V   + GD K +H  R    C    P
Sbjct: 132 KVLMPDRVYLLRGNHESKYCTSMYGFEKEVLTKY-GD-KGKHVYRKCLGCFEGLP 184


>At5g63870.1 68418.m08017 serine/threonine protein phosphatase (PP7)
           identical to PP7 [Arabidopsis thaliana] GI:2791900
          Length = 413

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 374 RVIAPAHKVLVAGHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRTATLCTANTP 538
           +V+ P    L+ G+HE +Y    Y F   V   + GD K +H  R    C    P
Sbjct: 132 KVLMPDRVYLLRGNHESKYCTSMYGFEKEVLTKY-GD-KGKHVYRKCLGCFEGLP 184


>At3g26890.2 68416.m03365 expressed protein
          Length = 649

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/66 (25%), Positives = 25/66 (37%)
 Frame = +2

Query: 392 HKVLVAGHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRTATLCTANTPCWKLTAQCARL 571
           H +    H +  Y+     F  SVA  H   N       + T  T +   WK  +   RL
Sbjct: 165 HDISCGNHQQITYSGQSNGFCNSVAQDHIKANTPSRLHLSTTPTTTSCWEWKNVSNSGRL 224

Query: 572 STPLTT 589
           S+ + T
Sbjct: 225 SSMVFT 230


>At3g26890.1 68416.m03364 expressed protein
          Length = 649

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/66 (25%), Positives = 25/66 (37%)
 Frame = +2

Query: 392 HKVLVAGHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRTATLCTANTPCWKLTAQCARL 571
           H +    H +  Y+     F  SVA  H   N       + T  T +   WK  +   RL
Sbjct: 165 HDISCGNHQQITYSGQSNGFCNSVAQDHIKANTPSRLHLSTTPTTTSCWEWKNVSNSGRL 224

Query: 572 STPLTT 589
           S+ + T
Sbjct: 225 SSMVFT 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,148,029
Number of Sequences: 28952
Number of extensions: 176033
Number of successful extensions: 519
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)