Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30942
(733 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 27 2.8
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 27 2.8
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 27 2.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.6
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 27 3.6
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 26 6.4
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 8.4
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 25 8.4
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1... 25 8.4
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 536 ERKELARRAPTPVRKKKLNTRLQRQNKKMSSTNLMLIRSLKNAPRMR 676
++ ++ ++ PT V +K N + K S NL+ R L +AP +R
Sbjct: 144 QKSDMTQKCPTMVASEKDNKGKLNEKKNRSPENLLPFRIL-DAPELR 189
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 97 KTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKSR 261
K + E+++ +V + +EY K L R + L R+E D + + E+ +SR
Sbjct: 181 KEEEARRQKEQQQGVVQVRQQKEYLKELERQKTVPLARYE-DDPEYNKELKERSR 234
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 512 KRSWPRNQERKELARRAPTPVRKKKLNTRLQRQNKKMSST 631
+ S N E E + P P +K+K LQ +N +SST
Sbjct: 516 RNSEEANDENDETNLKIPIPEKKRKFQEVLQSKNILVSST 555
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 342 RYSHFQNLIDGLYV*LFWIPWFLFRPHS 259
++S QNL GL++ W W F P +
Sbjct: 2402 KFSELQNLSTGLHMQAIWDKWHAFVPRT 2429
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.6 bits (56), Expect = 3.6
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = +1
Query: 157 LREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKSRMRTK*KPRNPKELNVKPINQI---- 324
+ E SLSR S R K +K SG S+ P NP + + + + +
Sbjct: 211 ISEKDTSLSRRSSR--GRSSAPKRRKD---SGSSKTTATYIPHNPSKKSSQHLPLLPDAS 265
Query: 325 --LKVRVARSYRNPKVSPKSSV 384
L+ V+RSY++P +P+SSV
Sbjct: 266 FELERSVSRSYQSPASTPRSSV 287
>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 26.2 bits (55), Expect = 4.8
Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Frame = +1
Query: 91 DGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKSRMRT 270
D + S TD +I ++P R+ + ++ P PF E D+ +++
Sbjct: 25 DAYSWSSSTDSAG--EIPSLPTNRKILEKIAEKPPPFESPLEDDETPDQTNEHEANQVNV 82
Query: 271 K*KPRNPKELNV--KPINQILKVRVARSYRNPKVSPKSSVRRRVHLREIRNSK 423
P NP+ + +P+ ++ + + + + ++RV + R SK
Sbjct: 83 SQLPLNPRGSGISGRPVESTEQLNSSLTIERSQSIQSTDSKQRVETQSHRRSK 135
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 121 DEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVS 249
D + + + NL Y K LSR+ S +L + I+ S+E +
Sbjct: 511 DVQDHIVTMVQNLNHYEKILSRSHSNYLAQISINMTLVSNETN 553
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 115 TDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVS 249
T+DEE D + +Y+KSL+ F ID E S
Sbjct: 1008 TEDEEISDCYLALPIEDYAKSLTEVDYNFFENRGIDYKSNPTEQS 1052
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 97 KTQSDHTDDEEKEDIVNIPN-LREYSKSLSRTPSPFL 204
K++SD DDEEK D+ IP+ ++ + L +P+ L
Sbjct: 1406 KSKSDRFDDEEK-DLDEIPSTAADFERQLLSSPNSSL 1441
>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 536 ERKELARRAPTPVRKKKLNTRLQRQNKKMSSTNLMLIRSLKNAPRMRVAKGQG 694
+RK+ RR PTP KK +L R +K+ + + + LK+ + + +G
Sbjct: 197 QRKKKIRRKPTPSSTKK--RKLTRTGQKLGTDMNIRLELLKSPAKPQAQSMRG 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,311
Number of Sequences: 5004
Number of extensions: 37989
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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