Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30942
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798     38   0.008
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572...    29   3.8  
02_05_0558 - 29950120-29950319,29951213-29951579,29952067-29952372     29   3.8  
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171...    29   5.0  
11_06_0710 - 26492093-26493460                                         28   6.6  
03_05_0145 + 21254448-21255488                                         28   8.8  

>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
          Length = 289

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = +1

Query: 64  EKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDE 243
           E PPP P N+ +       + +K+     P+     K   + P P  R+H+  K++K   
Sbjct: 47  EAPPPPPANNKRLNPQGGSNRKKKADAGTPS----KKPKRQPPEPKPRKHKGAKSEKPHR 102

Query: 244 VSGKSRMRTK*KPRNPKELNVKP 312
           VSG+    T  K +  KE + +P
Sbjct: 103 VSGEGEKPTPTKKKKKKESSKEP 125


>05_05_0334 +
           24156532-24156565,24156681-24156782,24157145-24157274,
           24157361-24157445,24157525-24157666,24157762-24157894,
           24157993-24158254,24158331-24158519,24158596-24158721,
           24158809-24159195,24159288-24159398,24159629-24160423,
           24161114-24161255,24161350-24162518,24162609-24162818,
           24163010-24163478,24164037-24164464
          Length = 1637

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = +1

Query: 64  EKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDE 243
           E+  P P   G+   D  DD+++ED  +     EY K             E D+ +  DE
Sbjct: 19  EEENPRPSRRGRDNMDRDDDDDEEDEED-EGQDEYEKDGFIVDDADEEEEEEDERESDDE 77

Query: 244 VSGKSRMRTK 273
              K R + K
Sbjct: 78  RRKKKRKKKK 87


>02_05_0558 - 29950120-29950319,29951213-29951579,29952067-29952372
          Length = 290

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +1

Query: 70  PPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLR 207
           P PEP  +  T +    DEE++  + I  +R   + L R P P+LR
Sbjct: 7   PEPEPQPELSTAAARRQDEERKTALRI--IRNELRLLWRDPPPYLR 50


>11_01_0219 -
           1710206-1710246,1710479-1710620,1710699-1710752,
           1710838-1710909,1711631-1711699,1711807-1711848,
           1711946-1712014,1712130-1712267,1712390-1712500,
           1712576-1712726,1713720-1713775,1714076-1714753
          Length = 540

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +1

Query: 61  VEKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKS 237
           VEKP P  F   K Q D  + + K+ +  +    +Y++     P+P     E+    K+
Sbjct: 384 VEKPSPLQFKSPKEQKDLDESKSKKGLAELYE-DDYAQKAGLAPAPLSISDELKNEAKT 441


>11_06_0710 - 26492093-26493460
          Length = 455

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +1

Query: 55  VAVEKPPPEPFND-GKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNK 231
           ++V+    EP +   +   D TDD E E        ++ SKS S          +  K  
Sbjct: 105 LSVDDSQAEPADSIAEPVEDGTDDGEDESEKKKKKKKKKSKSKSSDDDDDDAEKKSKKKS 164

Query: 232 KSDEVSGKSRMRTK*KPRNPKE 297
           K+ +     + ++K KP+NP +
Sbjct: 165 KNSDDDEDDKKKSKKKPKNPDD 186


>03_05_0145 + 21254448-21255488
          Length = 346

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = +1

Query: 55  VAVEKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKK 234
           V+  +PPPEP    + +     +EE+E++    ++   +   ++         E++K   
Sbjct: 57  VSRPRPPPEP----EKEVVKRKEEEEEEVSESASVASATAEKAKAKGGGEGEQEVEKKAI 112

Query: 235 SDEVSGKSRMRTK*KPRNPKE 297
                G++R RT  + R PKE
Sbjct: 113 GGMEKGRARRRTP-EQRRPKE 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,198,159
Number of Sequences: 37544
Number of extensions: 226654
Number of successful extensions: 834
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)