Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30942
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.045
SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_23503| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_1830| Best HMM Match : DUF331 (HMM E-Value=3.5) 31 0.73
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_28897| Best HMM Match : Trypsin (HMM E-Value=0) 31 1.3
SB_5429| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36) 31 1.3
SB_34801| Best HMM Match : Vicilin_N (HMM E-Value=0.3) 30 1.7
SB_52684| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_54716| Best HMM Match : S-antigen (HMM E-Value=1.8) 29 3.9
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.9
SB_44005| Best HMM Match : CUE (HMM E-Value=0.38) 29 5.1
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 29 5.1
SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3) 29 5.1
SB_44456| Best HMM Match : PQQ (HMM E-Value=0.73) 29 5.1
SB_55807| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 28 6.8
SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1177
Score = 35.5 bits (78), Expect = 0.045
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +1
Query: 100 TQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKSRMRTK*K 279
T DHT K ++ + S P PF R++E + NK S+ +S + RT
Sbjct: 799 TTVDHTSQPSKSHSRSLKQRKRKEMSALPQPMPFKRKYEREDNKMSNSIS-QLHKRTYAI 857
Query: 280 PRNPKELNVK 309
PR P +K
Sbjct: 858 PRTPSATRLK 867
>SB_57607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 32.3 bits (70), Expect = 0.42
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 515 RSWPRNQERKELARRAPTPVRKKKLNTR-LQRQNKKMSSTNLMLIRSLKNAPRMRV 679
R +P NQ R+ RR P+P+R + T+ + + + + +L+ R PR+R+
Sbjct: 262 RPFPTNQRRRRQLRRQPSPIRIRVPTTQSTEERRQNLMQRSLLQRRGHPPLPRLRL 317
>SB_23503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 31.9 bits (69), Expect = 0.55
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 310 ALRLALLDSLVFISSSFCSFPKLHQISYFCQFHVFARTVMECVKDFLS 167
A L +DS F+SSS + + Y F F RT++ KDF S
Sbjct: 19 AKHLTFIDSFHFMSSSLDRLKRSNPYDYMDSFEKFNRTILLLKKDFYS 66
>SB_1830| Best HMM Match : DUF331 (HMM E-Value=3.5)
Length = 326
Score = 31.5 bits (68), Expect = 0.73
Identities = 32/118 (27%), Positives = 43/118 (36%), Gaps = 10/118 (8%)
Frame = +1
Query: 88 NDGKTQSDHTDDEEKEDIVNI-PNLREYSKSLSRTP--------SPFLR-RHEIDKNKKS 237
+DG T+S+ DE++E + R S S P P L R + N
Sbjct: 59 HDGATRSEENSDEDEESFARLRAEGRRKSLSAGSIPKLCLQLNDKPLLETRERLSNNWMH 118
Query: 238 DEVSGKSRMRTK*KPRNPKELNVKPINQILKVRVARSYRNPKVSPKSSVRRRVHLREI 411
E+ R R P N P I KV R + K+ PKSS R +I
Sbjct: 119 SELYSDKRPRNTHGCETPPPQNKLPDIWISKVDAKRRESDHKLMPKSSFNRSASTGDI 176
>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 31.1 bits (67), Expect = 0.96
Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
Frame = +1
Query: 97 KTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRR--HEIDKNKKSDEVSGKSRMRT 270
KT + +D+EE + R+ S ++R P P L R H I +K S +
Sbjct: 547 KTIEEDSDEEETAKAMTYDEKRQLSLDINRLPGPKLGRVVHIIQSREKQLRDSNPDEIEI 606
Query: 271 K*KPRNPKELNVKPINQILKVRVARSYRNPKVSPKSSVRRRVHLREIRNSKKRAL 435
+ P L + + + ++ + + ++ P PK++ R + +R L
Sbjct: 607 DFETLAPSTL--RELEKYVQSCLRKKHKTPAKKPKNAEEREQEQARKKEELERRL 659
>SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 974
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 575 RKKKLNTRLQRQNKKMSSTNLMLIRSLKNAPR 670
RK+K N R+ +N+ ++ + LIRSL+NA R
Sbjct: 204 RKRKKNKRIPTRNRFLTVMHRALIRSLRNASR 235
>SB_5429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 515 RSWPRNQERKELARRAPTPVRKKKLNTR-LQRQNKKMSSTNLMLIRSLKNAPRMRV 679
R +P NQ+R RR P+P+R + + + ++ ++ +L+ R PR+R+
Sbjct: 95 RPFPTNQQRTRQLRRQPSPIRVRIPTAQSTEETSRNLAQLSLLQRRGHPPLPRLRL 150
>SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36)
Length = 592
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 515 RSWPRNQERKELARRAPTPVRKKKLNTR-LQRQNKKMSSTNLMLIRSLKNAPRMRV 679
R +P NQ+R RR P+P+R + + + ++ ++ +L+ R PR+R+
Sbjct: 427 RPFPTNQQRTRQLRRQPSPIRVRIPTAQSTEETSRNLAQLSLLQRRGHPPLPRLRL 482
>SB_34801| Best HMM Match : Vicilin_N (HMM E-Value=0.3)
Length = 451
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 515 RSWPRNQERKELARRAPTPVRKKKLNTR-LQRQNKKMSSTNLMLIRSLKNAPRMRV 679
R +P NQ+R RR P+P+R + + + ++ ++ +L+ R PR+R+
Sbjct: 323 RPFPTNQQRTRQLRRQPSPIRIRIPTAQSTEETSRNLAQLSLLQRRGHPPLPRLRL 378
>SB_52684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 515 RSWPRNQERKELARRAPTPVR-KKKLNTRLQRQNKKMSSTNLMLIRSLKNAPRMRV 679
R +P NQ+R RR P+P+R + + ++ ++ +L+ R PR+R+
Sbjct: 77 RPFPTNQQRTRQLRRQPSPIRIRIPAAQSTEETSRNLAQLSLLQRRGHPPLPRLRL 132
>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1735
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 55 VAVEKPPPEPFNDGKTQSDHTDDEEKED 138
V +KPPP N+ K D+ DD+ +D
Sbjct: 457 VTSKKPPPRETNNNKAAKDNEDDDVTDD 484
>SB_54716| Best HMM Match : S-antigen (HMM E-Value=1.8)
Length = 255
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 94 GKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKN-KKSDEVSGKSRMRT 270
GK + DH DDE+ D + R+ ++ R +P + ++KN +K ++ K T
Sbjct: 157 GKDEGDHDDDEDDGD-RDFKRDRKL-RAADRLGAPEQEKEAVEKNDEKEEKEQQKKEEGT 214
Query: 271 K*KPRNPKELNVK 309
K +PK ++++
Sbjct: 215 SDKAPSPKGIDLR 227
>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1346
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Frame = +2
Query: 530 NQERKELARRAPTPVRKKKLNTRLQRQN----KKMSSTN---LMLIRSLKNAPRMRVAKG 688
N+E+KE + + + RKK N R Q +N K+ S + L +++LKN ++ KG
Sbjct: 274 NKEKKEYPKVSSSSYRKKPDNARKQFENVRGDKEFESDDEVALSTLKTLKNPKAVKPIKG 333
Query: 689 Q 691
Q
Sbjct: 334 Q 334
>SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)
Length = 761
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 91 DGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGK-SRMR 267
D ++Q +D +D K TP LRR + ++KK +V K ++ +
Sbjct: 288 DSQSQGSDSDCLNSQDSQTSRTSNSSGKRKKLTPEDSLRRKQAAQDKKQAKVREKQAKQQ 347
Query: 268 TK*KPRNPKELNVKPINQILKV 333
+ K R KE + K + +++KV
Sbjct: 348 AQEKKRQEKERD-KLLKKLIKV 368
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 28.7 bits (61), Expect = 5.1
Identities = 24/69 (34%), Positives = 34/69 (49%)
Frame = +1
Query: 151 PNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKSRMRTK*KPRNPKELNVKPINQILK 330
P+ R SKS+S++PSP K K+S S SR R+ R+P+ P + K
Sbjct: 1110 PSRRSLSKSVSKSPSP------ARKGKRSSS-SSSSRSRS----RSPRRRKRSPTPKPTK 1158
Query: 331 VRVARSYRN 357
+ VA RN
Sbjct: 1159 LYVAHLTRN 1167
>SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3)
Length = 378
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 88 NDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDE 243
NDG SD T DEE+E+ + L SL P+ + RH D+++ D+
Sbjct: 311 NDGILDSDETMDEEEEEEEDNSLLH----SLLNPPTTWAERHGEDEDEVEDD 358
>SB_44456| Best HMM Match : PQQ (HMM E-Value=0.73)
Length = 551
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 515 RSWPRNQERKELARRAPTPVRKKKLNTR-LQRQNKKMSSTNLMLIRSLKNAPRMRV 679
R +P NQ+R RR P+P R + + + ++ ++ +L+ R PR+R+
Sbjct: 387 RPFPTNQQRTRQLRRQPSPPRVRIPTAQSTEETSRNLAQLSLLQRRGHPPLPRLRL 442
>SB_55807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 88 NDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRH 213
+D D DD++ +D V++ +L Y++S+S S RH
Sbjct: 16 DDDDDDDDDDDDDDDDDDVHLHDLSIYTRSISIYTSQRTNRH 57
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 28.3 bits (60), Expect = 6.8
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 5/128 (3%)
Frame = +1
Query: 64 EKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLR-----EYSKSLSRTPSPFLRRHEIDKN 228
EKP P P D ++D EE+ + R ++ + R RHE D+
Sbjct: 178 EKPRPHPVADEDERADVRRQEERTPLKRRSRSRSLRHEDHDDATPRRSRSHSLRHE-DEE 236
Query: 229 KKSDEVSGKSRMRTK*KPRNPKELNVKPINQILKVRVARSYRNPKVSPKSSVRRRVHLRE 408
++S G+ +P + +E + K + + + S SS RR H R+
Sbjct: 237 ERSPS-GGRHEREDSREPSSAEESSRTSSPHSRKKKSRKHRHRSRSSSLSSRRRSKHKRK 295
Query: 409 IRNSKKRA 432
+ + R+
Sbjct: 296 SKRDRSRS 303
>SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 277 KPRNPKELNVKPINQILKVRVARSYRNPKVSPKSS 381
KPRN + + KPI+ L R R N + SP S+
Sbjct: 875 KPRNLDQYSFKPISPRLGGRTIRGSNNSRKSPDST 909
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Frame = +1
Query: 76 PEPFNDGKTQSDHTDDE---EKEDIVNIPNLREYS-KSLSRTPSPFLRRHEIDKNKKSDE 243
P N+ T++ +T+D+ + + +++P+ YS + +R P HE +
Sbjct: 872 PSNNNNQGTKASYTNDQGTKPQPEKLSLPS--NYSLNTQNRVNDPKKVEHETKRQPVKAP 929
Query: 244 VSGKSRMRTK*KPRNPKELNVKPINQILKVRVARSY 351
++ + T + NP+ + KP Q K + RS+
Sbjct: 930 LTRSNSFNTPNRSNNPRRIEPKPKQQPFKSPLTRSH 965
>SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 91 DGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEV 246
DG D T+DEE+E+ + EY S P R E+++ + ++E+
Sbjct: 251 DGDDDDDETEDEEEEEEQPVMGWDEYGTS----PQRLQRIRELERARDAEEL 298
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,159,179
Number of Sequences: 59808
Number of extensions: 265084
Number of successful extensions: 1088
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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