Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30942
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical pr...    31   0.84 
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    31   1.1  
U00032-6|AAA50634.1|  389|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical...    30   1.9  
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    29   2.6  
U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U41992-7|AAA83358.1|  374|Caenorhabditis elegans Hypothetical pr...    29   4.5  
L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting...    29   4.5  
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting...    29   4.5  
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting...    29   4.5  
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC024777-4|AAF60561.3|  627|Caenorhabditis elegans Hypothetical ...    28   5.9  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z68218-4|CAA92474.1|  329|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U53341-7|AAC69111.3|  744|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical
           protein F53H2.1 protein.
          Length = 914

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = +1

Query: 79  EPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKS 258
           EPF    ++ ++++DEE+   +N    R++ +   R      R+ E    ++ +     S
Sbjct: 656 EPFEPKISEKEYSEDEEENTTINRDFHRKFQEQTKRNQEELRRKREERAARRREHEEELS 715

Query: 259 RMRTK*KPR 285
           +MR + K +
Sbjct: 716 KMRQESKQK 724


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 58  AVEKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSR 186
           A+E+   +   D + + D  D+EE+ED  N+P ++  +  L +
Sbjct: 423 AIEEDSDDEDEDEEEEEDEEDEEEEEDTTNVPLIKSKADLLKQ 465


>U00032-6|AAA50634.1|  389|Caenorhabditis elegans Hypothetical
           protein F37A4.6 protein.
          Length = 389

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +1

Query: 88  NDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKSRMR 267
           ND   + D TDDE + D+V+I   R   +++ ++P P  R         ++E+  KS M+
Sbjct: 189 NDDGDEEDDTDDEGEADLVSI-KTRSGRRNVLKSPPPPERIPSSMGASDAEEIDIKSHMK 247


>AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.14 protein.
          Length = 555

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +1

Query: 220 DKNKKSDEVSGKSRMRTK*KPRNPKELNVKPINQILKVRVARSYRNPKVSPK--SSVRRR 393
           ++ K+  +V  K+ +R   +PR P   N+KPI          S  N     K    ++ R
Sbjct: 385 NRKKEKPKVVRKAPLRAPIRPRQPPNQNIKPITPATPTPSQPSEENKAALAKQIEMMKIR 444

Query: 394 VHLREIRNSKK 426
            H+R+     K
Sbjct: 445 AHMRKAEERHK 455


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 250 PKLHQISYFCQFHVFARTVMECVKDFLSIHAGLEYLQYLLSLRRQCGLTGF 98
           P L QIS  CQ H F   +    K   S+++   Y+  +L  ++ CGL  +
Sbjct: 50  PYLEQISSICQHHWFYSFIKRYEK---SLNSFYSYMGSVLKSKKPCGLCSY 97


>U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical
           protein F18A1.1 protein.
          Length = 1075

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 217 IDKNKKSDEVSGKSRMRTK*KPRNPKELN 303
           I KN+   E SG+S +R K   +N KE+N
Sbjct: 863 IQKNESDSEFSGQSWLRRKESRKNAKEMN 891


>Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical
           protein C01G6.5 protein.
          Length = 952

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 109 DHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKSRMRTK*KPRN 288
           D TDD ++E+ V     R  +   + + S    R   DK+ + +E   K R R K  P  
Sbjct: 793 DETDDVQEEEKVTPRGGRRKNMKRTASQSAIKERKTKDKDVEPEEAPKKKRGRKKATPTE 852

Query: 289 PKE 297
            +E
Sbjct: 853 EEE 855


>U41992-7|AAA83358.1|  374|Caenorhabditis elegans Hypothetical
           protein F32E10.6 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 82  PFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKS 237
           P    K++ D + DEE+E+ V   + ++ SKS  R  S      E    KKS
Sbjct: 189 PKKSAKSKDDDSSDEEEEEEVKEKSPKKSSKSTKRAASDDDEEEEPVATKKS 240


>L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting
           protein protein8, isoform a protein.
          Length = 1132

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 64  EKPPPEPFNDGKTQSDHTDDEEKEDIVNI 150
           + PPPEP +  + +SD  D EE  DI+ I
Sbjct: 674 QPPPPEPMDTKENESD--DGEEDNDILEI 700


>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
           protein protein8, isoform b protein.
          Length = 1780

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 64  EKPPPEPFNDGKTQSDHTDDEEKEDIVNI 150
           + PPPEP +  + +SD  D EE  DI+ I
Sbjct: 674 QPPPPEPMDTKENESD--DGEEDNDILEI 700


>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
           protein protein8, isoform c protein.
          Length = 1697

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 64  EKPPPEPFNDGKTQSDHTDDEEKEDIVNI 150
           + PPPEP +  + +SD  D EE  DI+ I
Sbjct: 674 QPPPPEPMDTKENESD--DGEEDNDILEI 700


>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
            protein ZK617.1b protein.
          Length = 7158

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +1

Query: 97   KTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRH--EIDKNKKSDEVSGKSRMRT 270
            K +   +D  +KED     ++   S + S    P   RH  E+++   S+E+  K   R 
Sbjct: 797  KYEKTDSDGSKKEDKPKKVSIAPVSTNKSSDDEPSTPRHHKEVEEKSTSEELKAKVAGRQ 856

Query: 271  K*KPRNPKELNVKPINQILKVRVAR 345
              + RN  +   +P N + ++++ +
Sbjct: 857  VGQKRNGAQKPEEPKNLLSQIQLKK 881


>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
            ZK617.1b protein.
          Length = 7158

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +1

Query: 97   KTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRH--EIDKNKKSDEVSGKSRMRT 270
            K +   +D  +KED     ++   S + S    P   RH  E+++   S+E+  K   R 
Sbjct: 797  KYEKTDSDGSKKEDKPKKVSIAPVSTNKSSDDEPSTPRHHKEVEEKSTSEELKAKVAGRQ 856

Query: 271  K*KPRNPKELNVKPINQILKVRVAR 345
              + RN  +   +P N + ++++ +
Sbjct: 857  VGQKRNGAQKPEEPKNLLSQIQLKK 881


>AC024777-4|AAF60561.3|  627|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.4 protein.
          Length = 627

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 554 RRAPTPV-RKKKLNTRLQRQNKKMSSTNLMLIRSLKNAPR 670
           +RAP P  R+K LNT L  +N K  S +  +I    N  R
Sbjct: 221 KRAPPPASRRKSLNTSLNGKNSKKVSISNEVISPTTNGTR 260


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/85 (23%), Positives = 33/85 (38%)
 Frame = +1

Query: 70   PPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVS 249
            PPP P N+ + Q +  +   K  +  I    E  + L      F    E+D+  +  EV 
Sbjct: 1015 PPPPPKNEVRVQEEQLEGSRKRKLEQIQEEDEDEEILDEEEELFEEEEEVDEEYEG-EVE 1073

Query: 250  GKSRMRTK*KPRNPKELNVKPINQI 324
               R  ++      +E  V P  +I
Sbjct: 1074 EVHRESSEELDDEEEEEEVMPEEEI 1098


>Z68218-4|CAA92474.1|  329|Caenorhabditis elegans Hypothetical
           protein K01H12.4 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +2

Query: 512 KRSWPRNQERKELARRAPTPVRKKKLNTRLQRQNKKMSSTNLML 643
           K++  ++++R+     AP P ++ + +T+L  +N+   STNL +
Sbjct: 254 KKNSEKSKKRERCIDDAPIPPKQLQSSTKLNIENRTKFSTNLSI 297


>U53341-7|AAC69111.3|  744|Caenorhabditis elegans Hypothetical
           protein F49E10.1 protein.
          Length = 744

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +1

Query: 100 TQSDHTDDEEKEDI-VNIPNLREYSKSLSRTPSPFLRRHEID-KNKKSDEVSGKSRMRTK 273
           +  D  DD EK D  V +  + E ++   +TP  F   H++   + KS++   +SR R K
Sbjct: 238 SSEDGDDDCEKPDPGVGLEKILESTQMFDKTPEQFALEHDLMLTDTKSNDSEEQSRGRKK 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,594,736
Number of Sequences: 27780
Number of extensions: 208832
Number of successful extensions: 949
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)