Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30942
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.42 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   5.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 64   EKPPPEPFNDGKTQSDHTDDEEKEDI 141
            E PPP P N  +  S   D +E  +I
Sbjct: 1858 EPPPPPPRNHDQNNSSFNDSKESNEI 1883


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 88  NDGKTQSDHTDDEEKED 138
           NDG+   D  DDEE E+
Sbjct: 272 NDGEGADDRDDDEENEE 288


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 563 PTPVRKKKLNTRLQRQNKKMSSTNLMLIRSLKNA 664
           P P+ K+K     ++++K + + N     +LKNA
Sbjct: 62  PQPISKRKDKEHKKKKSKTILAVNAEADITLKNA 95


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 620 MSSTNLMLIRSLKNAPRM 673
           +SST+  L RSL   PRM
Sbjct: 699 LSSTHSTLARSLMEGPRM 716


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 563 PTPVRKKKLNTRLQRQNKKMSSTNLMLIRSLKNA 664
           P P+ K+K     ++++K + + N     +LKNA
Sbjct: 62  PQPISKRKDKEHKKKKSKTILAVNAEADITLKNA 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,200
Number of Sequences: 438
Number of extensions: 2948
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)