Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30942
(733 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family... 32 0.45
At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing ... 31 0.60
At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing ... 31 0.60
At1g13610.1 68414.m01597 expressed protein ; expression supporte... 31 0.60
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot... 31 0.79
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 30 1.4
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 30 1.4
At3g27250.1 68416.m03406 expressed protein 30 1.8
At5g61150.2 68418.m07672 leo1-like family protein weak similarit... 29 2.4
At5g61150.1 68418.m07671 leo1-like family protein weak similarit... 29 2.4
At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1) domain... 29 4.2
At3g22220.1 68416.m02803 hAT dimerisation domain-containing prot... 29 4.2
At5g67410.1 68418.m08500 hypothetical protein 28 5.6
At2g36330.1 68415.m04459 integral membrane protein, putative con... 28 5.6
At2g16860.1 68415.m01939 GCIP-interacting family protein similar... 28 5.6
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr... 28 7.3
At2g46330.2 68415.m05765 arabinogalactan-protein (AGP16) identic... 28 7.3
At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD, chlor... 28 7.3
At5g40450.1 68418.m04905 expressed protein 27 9.7
At4g38550.1 68417.m05458 expressed protein 27 9.7
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont... 27 9.7
At1g56100.1 68414.m06442 pectinesterase inhibitor domain-contain... 27 9.7
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 27 9.7
>At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; similar to hydroxyproline-rich
Glycoprotein (HRGP) [Zea mays] gi|4007865|emb|CAA10387
Length = 343
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 70 PPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLS 183
PPP + D +T SD DD + ++P+L ++S+S
Sbjct: 143 PPPPMYGDVETSSDIFDDASSDSFSSVPSLLATNRSVS 180
>At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 457
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 91 DGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKSRMRT 270
DG +S+ EEK+ +LR S ++ T S + E K K++E SG +
Sbjct: 68 DGGGESETDKKEEKDSECQEESLRNESNDVTTTTSGITEKTETTKAAKTNEESGGTACSQ 127
Query: 271 K*KPRNPKEL 300
+ K + P ++
Sbjct: 128 EGKLKKPDKI 137
>At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 457
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 91 DGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKSRMRT 270
DG +S+ EEK+ +LR S ++ T S + E K K++E SG +
Sbjct: 68 DGGGESETDKKEEKDSECQEESLRNESNDVTTTTSGITEKTETTKAAKTNEESGGTACSQ 127
Query: 271 K*KPRNPKEL 300
+ K + P ++
Sbjct: 128 EGKLKKPDKI 137
>At1g13610.1 68414.m01597 expressed protein ; expression supported
by MPSS
Length = 351
Score = 31.5 bits (68), Expect = 0.60
Identities = 24/94 (25%), Positives = 47/94 (50%)
Frame = +1
Query: 112 HTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKSRMRTK*KPRNP 291
H+D E + +P+LR++ ++ + P P RR + + K+D+ + S + + R+
Sbjct: 237 HSDIEMSPEY--LPHLRKFISAIEKLPVPKFRRQSLANDHKNDKSTKSSWIGS----RHS 290
Query: 292 KELNVKPINQILKVRVARSYRNPKVSPKSSVRRR 393
E V P ++ K+ + + P+ S SS R R
Sbjct: 291 IEC-VPPRDKSRKISIDHRFGKPRNSVGSSDRAR 323
>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 438
Score = 31.1 bits (67), Expect = 0.79
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Frame = +1
Query: 91 DGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKSRMRT 270
D KT+S DD+EKE+ N ++ ++ + FL+R + + +K E + K++ +
Sbjct: 298 DTKTESSDDDDDEKEE--NSKTEKKTVADKKKSVADFLKRIKKNSPQKGKETTSKNQKKN 355
Query: 271 --K*KPRNPKEL----NVKPINQILKVRVARSYRNPK 363
K N + NVK N +K R RS K
Sbjct: 356 DGNVKKENDHQKKSDGNVKKENSKVKPRELRSSTGKK 392
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 83 GSGGGFSTATDDSRLVLDIMRSLDSH 6
G GGG +A D S+ ++DI++ + SH
Sbjct: 85 GGGGGVKSAGDKSQPLIDIIKLIRSH 110
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 181 SRTPSPFLRRHEIDKNKKSDEVSGKSRMRTK*KPRNPKELNVKPINQILKVRVARSY 351
SR+P P+ +R E ++ +SR R+K P N + V+ QI++V R Y
Sbjct: 284 SRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENGQ---VESPGQIMEVEAGRGY 337
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 181 SRTPSPFLRRHEIDKNKKSDEVSGKSRMRTK*KPRNPKELNVKPINQILKVRVARSY 351
SR+P P+ +R E ++ +SR R+K P N + V+ QI++V R Y
Sbjct: 284 SRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENGQ---VESPGQIMEVEAGRGY 337
>At3g27250.1 68416.m03406 expressed protein
Length = 282
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1
Query: 94 GKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKS 237
GK++SD +DD E+ D+V + L E S +S SP L + +D + KS
Sbjct: 76 GKSRSDLSDDREQTDVVTLQLLPEKS-DISGEYSP-LDQDSLDPSVKS 121
>At5g61150.2 68418.m07672 leo1-like family protein weak similarity
to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04004: Leo1-like protein;
supporting cDNA gi|21929714|gb|AF490422.1|
Length = 623
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 506 NLKRSWPRNQERKELARRAPTPVRKKKLNT 595
NLK S +Q R+++ R+ P PV +++L+T
Sbjct: 428 NLKASTKLSQAREKIKRKYPLPVERRQLST 457
>At5g61150.1 68418.m07671 leo1-like family protein weak similarity
to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04004: Leo1-like protein;
supporting cDNA gi|21929714|gb|AF490422.1|
Length = 625
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 506 NLKRSWPRNQERKELARRAPTPVRKKKLNT 595
NLK S +Q R+++ R+ P PV +++L+T
Sbjct: 428 NLKASTKLSQAREKIKRKYPLPVERRQLST 457
>At5g64430.1 68418.m08093 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile PF00564:
PB1 domain
Length = 513
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 64 EKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSK 174
+ PPP+PF G +T +V +P+ Y++
Sbjct: 417 QPPPPQPFTSGPPPPQYTAVPPPRQVVGLPDTSAYTQ 453
>At3g22220.1 68416.m02803 hAT dimerisation domain-containing protein
contains Pfam profiles PF04937: Protein of unknown
function (DUF 659), PF05699 hAT family dimerisation
domain
Length = 761
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +1
Query: 223 KNKKSDEVSGKSRMRTK*KPRNPKELNVKPINQILKVRVARSYRNPKVSPKSSVRRRVHL 402
K+ SD V G+S RTK + ++ N N + V V R N SSV+ VH
Sbjct: 122 KSPSSDVVVGQSTGRTKQRTYRSRKNNAFERNDLANVEVDRDMDNLIPVAISSVKNIVHP 181
Query: 403 REIRNSKKRALLAIG 447
+ +K +A+G
Sbjct: 182 TS-KEREKTVHMAMG 195
>At5g67410.1 68418.m08500 hypothetical protein
Length = 287
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 178 LSRTPSPFLRRHEIDKNKKSDEVSGKSRMRTK*KPRNPKE 297
LS+T PF++ NKK +++G + K PR+P++
Sbjct: 78 LSKTLPPFVKNGVESDNKKKKQLNGAFQSLCKELPRSPRK 117
>At2g36330.1 68415.m04459 integral membrane protein, putative
contains 4 transmembrane domains; contains Pfam PF04535
: Domain of unknown function (DUF588); similar to
putative ethylene responsive element binding protein
(GI:22135858) [Arabidopsis thaliana]
Length = 431
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 109 DHTDDEEKEDIVNIPNLREYSK--SLSRTPSPFLRRHEIDKNKKSDEVSGKS 258
DH+ + EKED + P R + TPSP + H +++ K + KS
Sbjct: 224 DHSSESEKEDAKSKPESRRNKNPGKVEETPSPIVVVHNHNRSVKEVVPTRKS 275
>At2g16860.1 68415.m01939 GCIP-interacting family protein similar to
GCIP-interacting protein mp29 (GI:27372623) [Mus
musculus]; similar to GCIP-interacting protein P29
(GI:11967379) [Homo sapiens]
Length = 298
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/81 (20%), Positives = 40/81 (49%)
Frame = +1
Query: 61 VEKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSD 240
V + EP +D + + D +++EE+E+ P + + ++ R F R ++++ +KS+
Sbjct: 46 VHEQTREPLDDKRIEEDSSEEEEEEEDNQEPQV-DVTQLTGRQKKLFELRLKMNEARKSN 104
Query: 241 EVSGKSRMRTK*KPRNPKELN 303
+ S + P K ++
Sbjct: 105 QTDVGSEKKKMEAPTETKGIS 125
>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
protein precursor - Plasmodium falciparum, PIR2:A54514
Length = 504
Score = 27.9 bits (59), Expect = 7.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 70 PPPEPFNDGKTQSDHTDDEEKED 138
PPP+P +++SD ++D E E+
Sbjct: 438 PPPKPIKAEESESDDSEDSENEE 460
>At2g46330.2 68415.m05765 arabinogalactan-protein (AGP16) identical
to gi|10880509|gb|AAG24284
Length = 57
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 366 YFWISIAPRYSHFQ 325
YF +S+ PRYSHFQ
Sbjct: 43 YFSLSLLPRYSHFQ 56
>At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative (CHLD) similar to Mg-chelatase SP|O24133 from
Nicotiana tabacum, GB:AF014399 GI:2318116 from [Pisum
sativum]
Length = 760
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 70 PPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFL 204
PPP+ G+ +++ +EE+ED N N E + + P F+
Sbjct: 416 PPPQNSESGEEENEEEQEEEEEDESNEEN--ENEQQQDQIPEEFI 458
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 70 PPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEV 246
P + +T S+ TDDE+ +D I ++RE ++ T L +D+ + DE+
Sbjct: 1671 PSSSEEKEHETVSEKTDDEKVKDAEPIGDMRERGLDIAET--THLSLPSVDQKEDVDEI 1727
>At4g38550.1 68417.m05458 expressed protein
Length = 612
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/98 (21%), Positives = 40/98 (40%)
Frame = +1
Query: 70 PPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVS 249
PPP+P+ + H D+E+ E + + + K S PSP + + +
Sbjct: 291 PPPQPYRTPDHRRSHQDNEDFEAMYELDGDLIHQK--SAPPSPVHGPYYSSSDDDNHSTY 348
Query: 250 GKSRMRTK*KPRNPKELNVKPINQILKVRVARSYRNPK 363
+R+ + R E N P++ ++ A +Y K
Sbjct: 349 LYPEIRSPLRSRIVSE-NSTPVHHNYQIVAAETYEQDK 385
>At3g17920.1 68416.m02282 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 962
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +1
Query: 73 PPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKK 234
P E F D TD E+K + N + + +++ TP P D N+K
Sbjct: 433 PSEDFVDVSKNGSSTDSEQKYYMKNRNGPKHHGETMRYTPGPLPSFQITDLNQK 486
>At1g56100.1 68414.m06442 pectinesterase inhibitor domain-containing
protein contains TIGRFAM TIGR01614: pectinesterase
inhibitor domain; contains weak hit to Pfam PF04043:
Plant invertase/pectin methylesterase inhibitor
Length = 232
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 115 TDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKSRMR 267
TDD EKE I+++ N S+++ L+ + D+ KS++ K R
Sbjct: 128 TDDAEKEGIIDVVNAT--SEAIENETEVDLKEKDGDEEAKSEKPKKKKEQR 176
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 118 DDEEKEDIVNIPNL-REYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKSRM 264
D+ EKE + N+P+L + + +++T P +I KKS S++
Sbjct: 665 DETEKESLKNLPSLHKSHQPDINKTLLPIKNISQISSLKKSTSSIDASKL 714
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,945,744
Number of Sequences: 28952
Number of extensions: 192317
Number of successful extensions: 913
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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