Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30941
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 133 3e-32
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 126 5e-30
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 124 1e-29
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 93 3e-20
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 91 2e-19
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 28 1.3
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 2.3
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 27 2.3
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 5.2
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 6.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.9
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 26 6.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.9
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 133 bits (321), Expect = 3e-32
Identities = 63/87 (72%), Positives = 74/87 (85%), Gaps = 1/87 (1%)
Frame = +3
Query: 255 ASDNQHTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGIPQIEVTFEIDANGILQVSA 434
A DNQ+TV IQVYEGER +TKDN+LLGKFDL GIPPAPRG+PQIEVTFE+DANG+L VSA
Sbjct: 458 AVDNQNTVLIQVYEGERTLTKDNNLLGKFDLRGIPPAPRGVPQIEVTFEVDANGVLTVSA 517
Query: 435 EDK-GTGNREKIVITNDQNRLTPEDMK 512
DK G G EK+VI ND+ RL+ ED++
Sbjct: 518 VDKSGKGKPEKLVIKNDKGRLSEEDIE 544
Score = 108 bits (260), Expect = 8e-25
Identities = 56/87 (64%), Positives = 65/87 (74%)
Frame = +1
Query: 1 PKVQQLVKEFFNGKEPSRGINPDEXXXXXXXXXXXXLSGEQDTDAIVLLDVNPLTMGIET 180
PKVQ+L++ FF GK+ S+GINPDE LSGE+ +D IVLLDV PLT+GIET
Sbjct: 374 PKVQELLESFF-GKKASKGINPDEAVAYGAAVQAGVLSGEEGSDNIVLLDVIPLTLGIET 432
Query: 181 VGGVMTKLIPRNTVIPTKKSQIFSTPV 261
GGVMTKLI RNT IPT+KSQIFST V
Sbjct: 433 TGGVMTKLIGRNTPIPTRKSQIFSTAV 459
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/68 (39%), Positives = 39/68 (57%)
Frame = +2
Query: 509 ERMIXXXXXXXXXXXXXXXRVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEAL 688
ERM+ R+E+RN LE+YAYS+K Q D E+LG KV +DK + +A+
Sbjct: 544 ERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAV 603
Query: 689 DAAIKWLE 712
+ +WLE
Sbjct: 604 EDVAEWLE 611
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 126 bits (303), Expect = 5e-30
Identities = 58/84 (69%), Positives = 71/84 (84%)
Frame = +3
Query: 258 SDNQHTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGIPQIEVTFEIDANGILQVSAE 437
SDNQ V IQV+EGER TKD +LLGKF+L+GIPPAPRG+PQIEVTF++DANGIL VSA
Sbjct: 430 SDNQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSAL 489
Query: 438 DKGTGNREKIVITNDQNRLTPEDM 509
+KGTG +KI ITND+ RL+ E++
Sbjct: 490 EKGTGKTQKITITNDKGRLSKEEI 513
Score = 103 bits (246), Expect = 4e-23
Identities = 51/87 (58%), Positives = 62/87 (71%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 PKVQQLVKEFFNGKEPSRGINPDEXXXXXXXXXXXXLSGE--QDTDAIVLLDVNPLTMGI 174
P+VQ+LV +FFNGKEP + INPDE L+G+ + T ++LLDV PL+MGI
Sbjct: 342 PRVQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLDVAPLSMGI 401
Query: 175 ETVGGVMTKLIPRNTVIPTKKSQIFST 255
ET GGVMT LI RNT IPTKKS+IFST
Sbjct: 402 ETAGGVMTPLIKRNTTIPTKKSEIFST 428
Score = 49.2 bits (112), Expect = 6e-07
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +2
Query: 566 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDN 718
R++++N LESYAYS++N L D L KV DK +++A+ I+WL+ N
Sbjct: 533 RIQAKNHLESYAYSLRNSLDD-PNLKDKVDASDKETVDKAVKETIEWLDSN 582
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 124 bits (300), Expect = 1e-29
Identities = 57/84 (67%), Positives = 71/84 (84%)
Frame = +3
Query: 258 SDNQHTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGIPQIEVTFEIDANGILQVSAE 437
+DNQ V IQV+EGER TKD +LLGKF+L+GIPPAPRG+PQIEVTF++DANGIL VSA
Sbjct: 430 ADNQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSAL 489
Query: 438 DKGTGNREKIVITNDQNRLTPEDM 509
+KGTG +KI ITND+ RL+ E++
Sbjct: 490 EKGTGKTQKITITNDKGRLSKEEI 513
Score = 99 bits (238), Expect = 4e-22
Identities = 48/87 (55%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 PKVQQLVKEFFNGKEPSRGINPDEXXXXXXXXXXXXLSGE--QDTDAIVLLDVNPLTMGI 174
P++Q+LV +FFNGKEP + INPDE L G+ + T ++LLDV PL++GI
Sbjct: 342 PRIQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAILVGDTSEKTQDLLLLDVAPLSLGI 401
Query: 175 ETVGGVMTKLIPRNTVIPTKKSQIFST 255
ET GGVMT LI RNT IPTKKS++FST
Sbjct: 402 ETAGGVMTPLIKRNTTIPTKKSEVFST 428
Score = 48.8 bits (111), Expect = 9e-07
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +2
Query: 566 RVESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEALDAAIKWLEDN 718
R++++N LESYAYS++N L D L KV DK +++A+ I+WL+ N
Sbjct: 533 RIQAKNHLESYAYSLRNSLDD-PNLKDKVDASDKEAIDKAVKETIEWLDHN 582
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 93.5 bits (222), Expect = 3e-20
Identities = 45/86 (52%), Positives = 58/86 (67%)
Frame = +3
Query: 258 SDNQHTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGIPQIEVTFEIDANGILQVSAE 437
+DNQ TVT VY+GER +N LG+F LTGIPP PRG ++E TFE+DANGIL+V+A
Sbjct: 435 ADNQTTVTFPVYQGERVNCAENEPLGEFQLTGIPPMPRGQAELEATFELDANGILKVTAV 494
Query: 438 DKGTGNREKIVITNDQNRLTPEDMKE 515
+K TG I ITN L+ ++E
Sbjct: 495 EKTTGRSAHIEITNSVGHLSSTKIQE 520
Score = 70.9 bits (166), Expect = 2e-13
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Frame = +1
Query: 1 PKVQQLVKEFFNGKEPSRGINPDEXXXXXXXXXXXXLSGEQDTDA---IVLLDVNPLTMG 171
PKVQ+LV +FF+G+ ++ INPDE L+ + D+D ++LLDV PL++G
Sbjct: 346 PKVQRLVSDFFDGRALNKSINPDEAVAYGAAVQAAVLTNKADSDKTQDLLLLDVVPLSLG 405
Query: 172 IETVGGVMTKLIPRNTVIPTKKSQIFSTPVTTNT 273
+ G V + PRNT IPT K + F+T T
Sbjct: 406 VAMEGNVFGVVCPRNTPIPTIKKRTFTTVADNQT 439
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 90.6 bits (215), Expect = 2e-19
Identities = 41/86 (47%), Positives = 61/86 (70%)
Frame = +3
Query: 255 ASDNQHTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGIPQIEVTFEIDANGILQVSA 434
A+D Q V I+V++GER + +DN L+G F LTGI PAP+G PQIEV+F++DA+GI+ VSA
Sbjct: 472 AADGQTAVEIRVFQGERELVRDNKLIGNFQLTGIAPAPKGQPQIEVSFDVDADGIINVSA 531
Query: 435 EDKGTGNREKIVITNDQNRLTPEDMK 512
DK T N++ + + LT +++
Sbjct: 532 RDKAT-NKDSSITVAGSSGLTDSEIE 556
Score = 85.0 bits (201), Expect = 1e-17
Identities = 44/91 (48%), Positives = 57/91 (62%)
Frame = +1
Query: 1 PKVQQLVKEFFNGKEPSRGINPDEXXXXXXXXXXXXLSGEQDTDAIVLLDVNPLTMGIET 180
P+V + VK F +EP++ +NPDE LSG +VLLDV PL++GIET
Sbjct: 390 PRVVETVKSIFK-REPAKSVNPDEAVAIGAAIQGGVLSGH--VKDLVLLDVTPLSLGIET 446
Query: 181 VGGVMTKLIPRNTVIPTKKSQIFSTPVTTNT 273
+GGV T+LI RNT IPT+KSQ+FST T
Sbjct: 447 LGGVFTRLINRNTTIPTRKSQVFSTAADGQT 477
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 569 VESRNELESYAYSIKNQLQDKEKLGAKVTDDDKAKMEEA 685
+ S+N+ SY S N+LQD K+ TDD +E A
Sbjct: 355 ISSKNQTNSYL-SAANRLQDSPKISKARTDDALQALEVA 392
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +2
Query: 608 IKNQLQD--KEKLGAKVTDDDKAKMEEALD 691
+KNQ+ D KEKL +DD+K ++E D
Sbjct: 1094 LKNQIDDLAKEKLPLSSSDDEKVNIKEKTD 1123
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 27.5 bits (58), Expect = 2.3
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +3
Query: 237 ISDLLYASDNQHTVTIQVYEGERPM-TKDNHLLGKFDLTGIPPAPRGIPQIEVTFEIDAN 413
+SDLL + +N + QVY+ + TK + L +L IP I + + A+
Sbjct: 296 LSDLLPSEENYRNLVRQVYDKDTYFKTKKDDLTLSSELLVIPATLELISSMTSLLQSLAD 355
Query: 414 GILQVSAEDKGTGNREKIVITNDQNRLTPED 506
G ++ ++ E + +D + + ED
Sbjct: 356 GTDELEEQEDSLMEDEDLSYMDDMSNVVNED 386
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 458 SVSCSLIFSRYLQNTVGINFECDFNLWNT 372
S SC IF +L VG +F C ++ W+T
Sbjct: 427 SYSCDKIFGGFLLGVVGSDFICFYD-WDT 454
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -1
Query: 273 CVGCHWRREDLRFL---SWNDSVTRNEFGHHSTDSFNTHGQRVDIK 145
CV C + + L SW +T N + ++ D TH Q +++K
Sbjct: 1106 CVTCSDKHVIISLLLVSSWEKFLTSNNYSNYLADFETTHAQIMEMK 1151
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = -3
Query: 451 PVPLSSADTCKIPLAS----ISNVTSICGIPRGAGGIP 350
PVPL SAD IP+ S + TS +P+ + G P
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAP 1060
>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 25.8 bits (54), Expect = 6.9
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Frame = -3
Query: 520 NHSFISSGVSRFWSLVITIFSLFPVPLSSADTCKIPLASIS---NVTSICGIPRGAGGIP 350
N + + +S F S+ I +S FP+ ++S +PL I V A G+
Sbjct: 137 NIKLLGANISIFQSMCILGYSSFPLMIASIVCAFVPLIFIRIPVIVAMYAWTLFAAMGVL 196
Query: 349 VKSNLPSKWLSLVIGRSPSYTWIVTVCWL 263
SNL +K L V P + + ++ W+
Sbjct: 197 QNSNLSNKKLLAVY---PLFLFYFSLAWI 222
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 181 VGGVMTKLIPRNTVIPTKKSQIFSTPVTTNTLSLS 285
+ MT ++ ++ IPT S FS+ +TT + +S
Sbjct: 531 ISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGIS 565
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,029
Number of Sequences: 5004
Number of extensions: 53975
Number of successful extensions: 226
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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