Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30940
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1194 + 28305388-28305472,28305603-28305682,28305771-283058... 107 9e-24
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316... 105 3e-23
04_04_1528 + 34172149-34172233,34172335-34172414,34172621-341726... 83 2e-19
05_04_0158 + 18613265-18615304 32 0.41
10_08_0002 - 13986969-13989338 29 3.8
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566... 29 5.0
06_01_0448 - 3162059-3162092,3162636-3162763,3163556-3163597,316... 29 5.0
06_03_0087 + 16465947-16466315 28 8.7
>06_03_1194 +
28305388-28305472,28305603-28305682,28305771-28305839,
28305936-28305993,28306082-28306134,28306229-28306271,
28306360-28306421,28306914-28307027,28307183-28307285,
28307377-28307426,28308138-28308266,28308340-28308591,
28308684-28308763,28309040-28309166,28309247-28309390,
28309849-28310034
Length = 544
Score = 107 bits (257), Expect = 9e-24
Identities = 51/79 (64%), Positives = 61/79 (77%), Gaps = 4/79 (5%)
Frame = +2
Query: 2 DKIRIVLNKADMIDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDEPLRYD----VN 169
DKIR+VLNKAD +D QQLMRVYGALMWSLGKVL TPEVARVYIGSF D+P+ +
Sbjct: 350 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVARVYIGSFNDKPVNESAVGPIG 409
Query: 170 RRLFEDEEQDLFKDMQSLP 226
+ LFE E+ DL D++ +P
Sbjct: 410 KELFEREQDDLLSDLKDIP 428
Score = 89.0 bits (211), Expect = 3e-18
Identities = 41/108 (37%), Positives = 65/108 (60%)
Frame = +1
Query: 226 KECCPA*TKRLIKRARLAKVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQ 405
K+ C +KRAR AK+HA+I+ L+KEMP+M GK ++ LI NL + K+QREQ
Sbjct: 429 KKACDRRINEFVKRARAAKIHAHIIGHLKKEMPAMMGKAKAQQRLIDNLENEFAKVQREQ 488
Query: 406 QISPGDFPDIKKMQETLGQS*LHQVSPLETQVARIVDHMLATDIARLM 549
+ GDFP ++ ++ LG + + ++ ++ + VD ML DI L+
Sbjct: 489 HLPAGDFPYVEHFRDVLGGYSIDKFEKIKPKMVQAVDDMLGYDIPELL 536
>02_01_0436 -
3166764-3166949,3167115-3167258,3167343-3167469,
3167746-3167825,3167933-3168184,3168271-3168399,
3169039-3169088,3169221-3169323,3169429-3169548,
3169725-3169786,3169873-3169915,3169995-3170183,
3170299-3170367,3170460-3170539,3170648-3170723
Length = 569
Score = 105 bits (253), Expect = 3e-23
Identities = 51/79 (64%), Positives = 61/79 (77%), Gaps = 4/79 (5%)
Frame = +2
Query: 2 DKIRIVLNKADMIDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDEPLRYD----VN 169
DKIR+VLNKAD +D QQLMRVYGALMWSLGKVL TPEVARVYIGSF D+P+ +
Sbjct: 375 DKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVARVYIGSFNDKPVNESAVGPIG 434
Query: 170 RRLFEDEEQDLFKDMQSLP 226
+ LFE E+ DL D++ +P
Sbjct: 435 KDLFEKEQDDLLCDLKDIP 453
Score = 98.7 bits (235), Expect = 4e-21
Identities = 45/108 (41%), Positives = 67/108 (62%)
Frame = +1
Query: 226 KECCPA*TKRLIKRARLAKVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQ 405
K+ C +KRAR AK+HAYI+ L+KEMP+M GK ++ LI NLG + K+QRE
Sbjct: 454 KKACDRRVNEFVKRARAAKIHAYIIGHLKKEMPAMMGKAKAQQRLIDNLGDEFAKVQREY 513
Query: 406 QISPGDFPDIKKMQETLGQS*LHQVSPLETQVARIVDHMLATDIARLM 549
+ GDFPD++ +E LG + + ++ ++ + VD MLA DI L+
Sbjct: 514 HLPAGDFPDVEHFKEVLGGYNIDKFEKMKPKLVQAVDDMLAYDIPELL 561
>04_04_1528 +
34172149-34172233,34172335-34172414,34172621-34172689,
34172780-34172837,34173296-34173357,34173441-34173554,
34173862-34173964,34174085-34174134,34174335-34174724,
34174918-34175244,34175360-34175689
Length = 555
Score = 82.6 bits (195), Expect(2) = 2e-19
Identities = 38/44 (86%), Positives = 40/44 (90%)
Frame = +2
Query: 2 DKIRIVLNKADMIDHQQLMRVYGALMWSLGKVLQTPEVARVYIG 133
DKIRIVLNKAD +D QQLMRVYGAL+WSLGKVL TPEV RVYIG
Sbjct: 321 DKIRIVLNKADQVDAQQLMRVYGALLWSLGKVLNTPEVMRVYIG 364
Score = 82.2 bits (194), Expect = 4e-16
Identities = 39/108 (36%), Positives = 65/108 (60%)
Frame = +1
Query: 226 KECCPA*TKRLIKRARLAKVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQ 405
K+ C +KR+R AKVHA+I++ L+KEMP++ GK ++ L+ L + + K+Q+E
Sbjct: 440 KKACDRRINEFVKRSRSAKVHAHIISHLKKEMPALMGKAKAQQRLLDTLDEQFAKVQKEL 499
Query: 406 QISPGDFPDIKKMQETLGQS*LHQVSPLETQVARIVDHMLATDIARLM 549
+ GDFP + + +ETL + L+ ++ + VD MLA DI L+
Sbjct: 500 HLPAGDFPSVDEYRETLSAYNFDKFERLKPKLVQGVDDMLAYDIPDLL 547
Score = 31.1 bits (67), Expect(2) = 2e-19
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Frame = +2
Query: 134 SFWDEPLRYDV----NRRLFEDEEQDLFKDMQSLPXXXXXXXXXXXXXEHDLLRFMHT*S 301
SF D+P+R V + LFE E++DL D+ +P + +H
Sbjct: 405 SFNDKPIRETVAGPLGKELFEKEQEDLLSDLNDIPKKACDRRINEFVKRSRSAK-VHAHI 463
Query: 302 MS*GKRCLQCLVKIPKRKI*SRILVRFMIKY-KESSKYHRET--FQILKKCKRPWANHDF 472
+S K+ + L + K K R+L ++ K + H F + + + + ++F
Sbjct: 464 ISHLKKEMPAL--MGKAKAQQRLLDTLDEQFAKVQKELHLPAGDFPSVDEYRETLSAYNF 521
Query: 473 TKFHPLKPKLLE 508
KF LKPKL++
Sbjct: 522 DKFERLKPKLVQ 533
>05_04_0158 + 18613265-18615304
Length = 679
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 304 ELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPGDFPDI-KKMQETLGQS*LHQV 480
E KE + K+ + + LG+++DK + ++ G P I KK+Q+T + H
Sbjct: 603 EAGKEQEKVEKNQEKEMKIQEKLGEIFDKAMKSEE-KTGQNPGIEKKIQDTAEKKQEHDA 661
Query: 481 SPLETQVARIVD 516
++ +V +I D
Sbjct: 662 RVVQDKVEKIQD 673
>10_08_0002 - 13986969-13989338
Length = 789
Score = 29.1 bits (62), Expect = 3.8
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Frame = +1
Query: 280 KVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPG---DFPDIKKMQE 450
K + ++++ RK++ +F KDS ++ +IK + + + Q G DFP +
Sbjct: 409 KFYQLLLSDCRKKIDGIFTKDSYEQMIIKKENEYHMNVSAFQLEPIGVVPDFPYVAPFSS 468
Query: 451 TLGQS*LHQVSPLETQVARI-VDHML-ATDIA-RLMDMIPQEDINIVSEPLIKGGAFE 615
++ + L S ++ V + D M+ A D+ R +D + E +N LI GG E
Sbjct: 469 SVPDACLIVRSFIDDSVNYLSYDPMMDAYDVVKRYLDKLLIEVLNDGLLNLIHGGCLE 526
>08_02_0980 +
23255992-23256408,23256480-23256517,23256606-23256654,
23256787-23256848,23256876-23256938,23256939-23257599
Length = 429
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +3
Query: 615 RCRRPGLTIRLRSGRRAWTPATVTRNGSAARRNRTTTE 728
R RRP L +R RS RR+ +PA RR R T E
Sbjct: 290 RVRRPCLNMRPRSPRRSSSPAPPPSPRRILRRPRPTLE 327
>06_01_0448 -
3162059-3162092,3162636-3162763,3163556-3163597,
3163697-3163738,3163960-3164059,3164132-3164193,
3165085-3165169,3168003-3168187
Length = 225
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +1
Query: 316 EMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPGDFPDIKKMQETLGQS*LH 474
E+ M + SK + L L QV++ ++EQQ+ + +K+QET G++ LH
Sbjct: 134 EISLMNIRSSKNQQL---LDQVFELKRKEQQLQDANKDLKRKIQETSGENMLH 183
>06_03_0087 + 16465947-16466315
Length = 122
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 310 RKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPG-DFPD 432
RKE + ++KK+LI+ +V DK+Q E+ + G + PD
Sbjct: 63 RKESKNDVFVANRKKELIEKDAEVGDKVQVEEDVEVGEEVPD 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,091,354
Number of Sequences: 37544
Number of extensions: 437607
Number of successful extensions: 1159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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