Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30940
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59805| Best HMM Match : No HMM Matches (HMM E-Value=.)             146   2e-35
SB_5628| Best HMM Match : Complex1_LYR (HMM E-Value=3e-13)             31   0.72 
SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)          29   3.9  
SB_30665| Best HMM Match : F5_F8_type_C (HMM E-Value=2.5e-19)          28   6.7  
SB_50633| Best HMM Match : ShTK (HMM E-Value=0.78)                     28   6.7  
SB_12693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0014)          28   8.9  

>SB_59805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score =  146 bits (354), Expect = 2e-35
 Identities = 92/246 (37%), Positives = 122/246 (49%), Gaps = 3/246 (1%)
 Frame = +2

Query: 2   DKIRIVLNKADMIDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDEPLRYDVNRRLF 181
           DKIRIVLNKADMI+ QQLMRVYGALMWSLGKV+ TPEVARVYIGSFW++PL+ D NRRLF
Sbjct: 112 DKIRIVLNKADMINTQQLMRVYGALMWSLGKVINTPEVARVYIGSFWNQPLQMDDNRRLF 171

Query: 182 EDEEQDLFKDMQSLPXXXXXXXXXXXXXEHDLLRFMHT*SMS*GKRCLQCLVKIPKRKI* 361
           E E  DLF+D+Q LP                L + +H   +S  K  +  +    K+K  
Sbjct: 172 EMEATDLFRDIQELPRNAALRKLNDFIKRARLAK-VHAYIISELKSQMPSMFGKDKKK-- 228

Query: 362 SRILVRFMIKYKESSKYHRET---FQILKKCKRPWANHDFTKFHPLKPKLLE*WTTCWQR 532
             ++ +    Y++  + H  +   F  + K K     HDFTKFH L+ K +E        
Sbjct: 229 DELIKKLTDVYQKIQREHNISPGDFPPVSKFKEQLKQHDFTKFHTLRAKHIETLDHMLAH 288

Query: 533 TLHGSWI*FHRRTXXXXXXXXXXXXXXKV*KTRSHHSVTVGAKGVDAGHGDPEWICSQEK 712
            +          T               V    ++   +   +GV  G G   W+    K
Sbjct: 289 DIPRLMAMIPHETTDDASKPSVSGGAFAVHHATNNPFASGACEGVALGAGTDTWVVEDFK 348

Query: 713 PNYDRI 730
           P YD +
Sbjct: 349 PKYDEL 354



 Score =  138 bits (335), Expect = 3e-33
 Identities = 70/128 (54%), Positives = 84/128 (65%)
 Frame = +1

Query: 259 IKRARLAKVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPGDFPDIK 438
           IKRARLAKVHAYI++EL+ +MPSMFGKD KK +LIK L  VY KIQRE  ISPGDFP + 
Sbjct: 198 IKRARLAKVHAYIISELKSQMPSMFGKDKKKDELIKKLTDVYQKIQREHNISPGDFPPVS 257

Query: 439 KMQETLGQS*LHQVSPLETQVARIVDHMLATDIARLMDMIPQEDINIVSEPLIKGGAFEG 618
           K +E L Q    +   L  +    +DHMLA DI RLM MIP E  +  S+P + GGAF  
Sbjct: 258 KFKEQLKQHDFTKFHTLRAKHIETLDHMLAHDIPRLMAMIPHETTDDASKPSVSGGAFAV 317

Query: 619 VEDQVSPF 642
                +PF
Sbjct: 318 HHATNNPF 325


>SB_5628| Best HMM Match : Complex1_LYR (HMM E-Value=3e-13)
          Length = 487

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 552 YDSTGGHQHCQ*TSDKGWCFRRCRRPGLTIRLRSGRRAWTPATVTRNGSAARR 710
           +D  G  +  +  +  G   R C RPG+T+R R+   + TP   TRN S+  R
Sbjct: 192 FDHMGDKELIRSRAKPGKTLRSCVRPGMTLRSRTRNDSSTPRE-TRNDSSITR 243


>SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)
          Length = 727

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 541 VQCPLPACGPLF-*QLGFQGV 482
           + CPL  CGPLF  +LGF G+
Sbjct: 199 LHCPLDVCGPLFEDELGFWGI 219


>SB_30665| Best HMM Match : F5_F8_type_C (HMM E-Value=2.5e-19)
          Length = 578

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 537 CTAHGYDSTGGHQHCQ*TSDKGWCF 611
           CT  G +  G  + C   S  GWCF
Sbjct: 323 CTVEGQEPKGEDKQCIAVSGSGWCF 347


>SB_50633| Best HMM Match : ShTK (HMM E-Value=0.78)
          Length = 93

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 207 KTCSLCQGMLPCVN*TPY 260
           KTC +C+G++ C N TPY
Sbjct: 59  KTCGICEGLIKC-NDTPY 75


>SB_12693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0014)
          Length = 413

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 413 DICCSLCILS*T*PRFL--IRSFFLESLP 333
           ++ CSLCI   T PR L  +RSFF ++ P
Sbjct: 73  EVTCSLCIEHFTDPRVLHCLRSFFAKTTP 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,015,723
Number of Sequences: 59808
Number of extensions: 502227
Number of successful extensions: 1246
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)