Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30940
(730 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF357878-1|AAK27716.1| 589|Caenorhabditis elegans receptor-medi... 157 1e-38
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 157 1e-38
AF357876-1|AAK27714.1| 576|Caenorhabditis elegans receptor-medi... 157 1e-38
AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor med... 157 1e-38
AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor med... 157 1e-38
AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor med... 157 1e-38
AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor med... 157 1e-38
AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 157 1e-38
AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor med... 157 1e-38
U23519-8|AAK31503.3| 734|Caenorhabditis elegans Hypothetical pr... 30 1.5
U97005-10|AAK72084.1| 646|Caenorhabditis elegans Hypothetical p... 29 2.6
U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protei... 29 3.4
U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protei... 29 3.4
AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E prot... 29 3.4
AF098991-1|AAC67449.2| 758|Caenorhabditis elegans Hypothetical ... 29 3.4
AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E prot... 29 3.4
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 29 4.5
AC006832-5|AAF39998.1| 513|Caenorhabditis elegans Hypothetical ... 29 4.5
>AF357878-1|AAK27716.1| 589|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform I protein.
Length = 589
Score = 157 bits (380), Expect = 1e-38
Identities = 82/173 (47%), Positives = 115/173 (66%), Gaps = 4/173 (2%)
Frame = +2
Query: 2 DKIRIVLNKADMIDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDEPLRYDVNRRLF 181
DKIRIVLNK+DM+DHQQLMRVYGALMWSLGKV +TPEV+RVY+GSFWD PL YD+NRRLF
Sbjct: 246 DKIRIVLNKSDMVDHQQLMRVYGALMWSLGKVFKTPEVSRVYLGSFWDHPLHYDLNRRLF 305
Query: 182 EDEEQDLFKDMQSLPXXXXXXXXXXXXXEHDLLRFMHT*SMS*GKRCLQCLVKIPKRKI* 361
+DE+ DLF+D+Q+LP L + +H ++ ++ + ++ K+K
Sbjct: 306 QDEQHDLFQDLQALPRNAALRKLNDLIKRARLAK-VHAYIIAELRKQMPSMIGKDKKK-- 362
Query: 362 SRILVRFMIK-YKESSKYHRET---FQILKKCKRPWANHDFTKFHPLKPKLLE 508
+ L++ + K Y++ + H + F + K + DF+KF+PLKPKLLE
Sbjct: 363 -KDLIQNLDKIYEQLQREHNISPGDFPDVNKMREKLQTQDFSKFNPLKPKLLE 414
Score = 155 bits (377), Expect = 2e-38
Identities = 75/137 (54%), Positives = 100/137 (72%), Gaps = 6/137 (4%)
Frame = +1
Query: 256 LIKRARLAKVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPGDFPDI 435
LIKRARLAKVHAYI+ ELRK+MPSM GKD KKKDLI+NL ++Y+++QRE ISPGDFPD+
Sbjct: 331 LIKRARLAKVHAYIIAELRKQMPSMIGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPDV 390
Query: 436 KKMQETLGQS*LHQVSPLETQVARIVDHMLATDIARLMDMIPQEDI------NIVSEPLI 597
KM+E L + +PL+ ++ +VD MLATDIARLM IP+E+ N ++P +
Sbjct: 391 NKMREKLQTQDFSKFNPLKPKLLEVVDGMLATDIARLMAQIPKEEAAAPAGSNGSADPTV 450
Query: 598 KGGAFEGVEDQVSPFGY 648
+GGAF + +PFG+
Sbjct: 451 RGGAFSQTTEAETPFGF 467
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 157 bits (380), Expect = 1e-38
Identities = 82/173 (47%), Positives = 115/173 (66%), Gaps = 4/173 (2%)
Frame = +2
Query: 2 DKIRIVLNKADMIDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDEPLRYDVNRRLF 181
DKIRIVLNK+DM+DHQQLMRVYGALMWSLGKV +TPEV+RVY+GSFWD PL YD+NRRLF
Sbjct: 492 DKIRIVLNKSDMVDHQQLMRVYGALMWSLGKVFKTPEVSRVYLGSFWDHPLHYDLNRRLF 551
Query: 182 EDEEQDLFKDMQSLPXXXXXXXXXXXXXEHDLLRFMHT*SMS*GKRCLQCLVKIPKRKI* 361
+DE+ DLF+D+Q+LP L + +H ++ ++ + ++ K+K
Sbjct: 552 QDEQHDLFQDLQALPRNAALRKLNDLIKRARLAK-VHAYIIAELRKQMPSMIGKDKKK-- 608
Query: 362 SRILVRFMIK-YKESSKYHRET---FQILKKCKRPWANHDFTKFHPLKPKLLE 508
+ L++ + K Y++ + H + F + K + DF+KF+PLKPKLLE
Sbjct: 609 -KDLIQNLDKIYEQLQREHNISPGDFPDVNKMREKLQTQDFSKFNPLKPKLLE 660
Score = 155 bits (377), Expect = 2e-38
Identities = 75/137 (54%), Positives = 100/137 (72%), Gaps = 6/137 (4%)
Frame = +1
Query: 256 LIKRARLAKVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPGDFPDI 435
LIKRARLAKVHAYI+ ELRK+MPSM GKD KKKDLI+NL ++Y+++QRE ISPGDFPD+
Sbjct: 577 LIKRARLAKVHAYIIAELRKQMPSMIGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPDV 636
Query: 436 KKMQETLGQS*LHQVSPLETQVARIVDHMLATDIARLMDMIPQEDI------NIVSEPLI 597
KM+E L + +PL+ ++ +VD MLATDIARLM IP+E+ N ++P +
Sbjct: 637 NKMREKLQTQDFSKFNPLKPKLLEVVDGMLATDIARLMAQIPKEEAAAPAGSNGSADPTV 696
Query: 598 KGGAFEGVEDQVSPFGY 648
+GGAF + +PFG+
Sbjct: 697 RGGAFSQTTEAETPFGF 713
>AF357876-1|AAK27714.1| 576|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform IV protein.
Length = 576
Score = 157 bits (380), Expect = 1e-38
Identities = 82/173 (47%), Positives = 115/173 (66%), Gaps = 4/173 (2%)
Frame = +2
Query: 2 DKIRIVLNKADMIDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDEPLRYDVNRRLF 181
DKIRIVLNK+DM+DHQQLMRVYGALMWSLGKV +TPEV+RVY+GSFWD PL YD+NRRLF
Sbjct: 228 DKIRIVLNKSDMVDHQQLMRVYGALMWSLGKVFKTPEVSRVYLGSFWDHPLHYDLNRRLF 287
Query: 182 EDEEQDLFKDMQSLPXXXXXXXXXXXXXEHDLLRFMHT*SMS*GKRCLQCLVKIPKRKI* 361
+DE+ DLF+D+Q+LP L + +H ++ ++ + ++ K+K
Sbjct: 288 QDEQHDLFQDLQALPRNAALRKLNDLIKRARLAK-VHAYIIAELRKQMPSMIGKDKKK-- 344
Query: 362 SRILVRFMIK-YKESSKYHRET---FQILKKCKRPWANHDFTKFHPLKPKLLE 508
+ L++ + K Y++ + H + F + K + DF+KF+PLKPKLLE
Sbjct: 345 -KDLIQNLDKIYEQLQREHNISPGDFPDVNKMREKLQTQDFSKFNPLKPKLLE 396
Score = 155 bits (377), Expect = 2e-38
Identities = 75/137 (54%), Positives = 100/137 (72%), Gaps = 6/137 (4%)
Frame = +1
Query: 256 LIKRARLAKVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPGDFPDI 435
LIKRARLAKVHAYI+ ELRK+MPSM GKD KKKDLI+NL ++Y+++QRE ISPGDFPD+
Sbjct: 313 LIKRARLAKVHAYIIAELRKQMPSMIGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPDV 372
Query: 436 KKMQETLGQS*LHQVSPLETQVARIVDHMLATDIARLMDMIPQEDI------NIVSEPLI 597
KM+E L + +PL+ ++ +VD MLATDIARLM IP+E+ N ++P +
Sbjct: 373 NKMREKLQTQDFSKFNPLKPKLLEVVDGMLATDIARLMAQIPKEEAAAPAGSNGSADPTV 432
Query: 598 KGGAFEGVEDQVSPFGY 648
+GGAF + +PFG+
Sbjct: 433 RGGAFSQTTEAETPFGF 449
>AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform f protein.
Length = 555
Score = 157 bits (380), Expect = 1e-38
Identities = 82/173 (47%), Positives = 115/173 (66%), Gaps = 4/173 (2%)
Frame = +2
Query: 2 DKIRIVLNKADMIDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDEPLRYDVNRRLF 181
DKIRIVLNK+DM+DHQQLMRVYGALMWSLGKV +TPEV+RVY+GSFWD PL YD+NRRLF
Sbjct: 212 DKIRIVLNKSDMVDHQQLMRVYGALMWSLGKVFKTPEVSRVYLGSFWDHPLHYDLNRRLF 271
Query: 182 EDEEQDLFKDMQSLPXXXXXXXXXXXXXEHDLLRFMHT*SMS*GKRCLQCLVKIPKRKI* 361
+DE+ DLF+D+Q+LP L + +H ++ ++ + ++ K+K
Sbjct: 272 QDEQHDLFQDLQALPRNAALRKLNDLIKRARLAK-VHAYIIAELRKQMPSMIGKDKKK-- 328
Query: 362 SRILVRFMIK-YKESSKYHRET---FQILKKCKRPWANHDFTKFHPLKPKLLE 508
+ L++ + K Y++ + H + F + K + DF+KF+PLKPKLLE
Sbjct: 329 -KDLIQNLDKIYEQLQREHNISPGDFPDVNKMREKLQTQDFSKFNPLKPKLLE 380
Score = 155 bits (377), Expect = 2e-38
Identities = 75/137 (54%), Positives = 100/137 (72%), Gaps = 6/137 (4%)
Frame = +1
Query: 256 LIKRARLAKVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPGDFPDI 435
LIKRARLAKVHAYI+ ELRK+MPSM GKD KKKDLI+NL ++Y+++QRE ISPGDFPD+
Sbjct: 297 LIKRARLAKVHAYIIAELRKQMPSMIGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPDV 356
Query: 436 KKMQETLGQS*LHQVSPLETQVARIVDHMLATDIARLMDMIPQEDI------NIVSEPLI 597
KM+E L + +PL+ ++ +VD MLATDIARLM IP+E+ N ++P +
Sbjct: 357 NKMREKLQTQDFSKFNPLKPKLLEVVDGMLATDIARLMAQIPKEEAAAPAGSNGSADPTV 416
Query: 598 KGGAFEGVEDQVSPFGY 648
+GGAF + +PFG+
Sbjct: 417 RGGAFSQTTEAETPFGF 433
>AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform d protein.
Length = 576
Score = 157 bits (380), Expect = 1e-38
Identities = 82/173 (47%), Positives = 115/173 (66%), Gaps = 4/173 (2%)
Frame = +2
Query: 2 DKIRIVLNKADMIDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDEPLRYDVNRRLF 181
DKIRIVLNK+DM+DHQQLMRVYGALMWSLGKV +TPEV+RVY+GSFWD PL YD+NRRLF
Sbjct: 228 DKIRIVLNKSDMVDHQQLMRVYGALMWSLGKVFKTPEVSRVYLGSFWDHPLHYDLNRRLF 287
Query: 182 EDEEQDLFKDMQSLPXXXXXXXXXXXXXEHDLLRFMHT*SMS*GKRCLQCLVKIPKRKI* 361
+DE+ DLF+D+Q+LP L + +H ++ ++ + ++ K+K
Sbjct: 288 QDEQHDLFQDLQALPRNAALRKLNDLIKRARLAK-VHAYIIAELRKQMPSMIGKDKKK-- 344
Query: 362 SRILVRFMIK-YKESSKYHRET---FQILKKCKRPWANHDFTKFHPLKPKLLE 508
+ L++ + K Y++ + H + F + K + DF+KF+PLKPKLLE
Sbjct: 345 -KDLIQNLDKIYEQLQREHNISPGDFPDVNKMREKLQTQDFSKFNPLKPKLLE 396
Score = 155 bits (377), Expect = 2e-38
Identities = 75/137 (54%), Positives = 100/137 (72%), Gaps = 6/137 (4%)
Frame = +1
Query: 256 LIKRARLAKVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPGDFPDI 435
LIKRARLAKVHAYI+ ELRK+MPSM GKD KKKDLI+NL ++Y+++QRE ISPGDFPD+
Sbjct: 313 LIKRARLAKVHAYIIAELRKQMPSMIGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPDV 372
Query: 436 KKMQETLGQS*LHQVSPLETQVARIVDHMLATDIARLMDMIPQEDI------NIVSEPLI 597
KM+E L + +PL+ ++ +VD MLATDIARLM IP+E+ N ++P +
Sbjct: 373 NKMREKLQTQDFSKFNPLKPKLLEVVDGMLATDIARLMAQIPKEEAAAPAGSNGSADPTV 432
Query: 598 KGGAFEGVEDQVSPFGY 648
+GGAF + +PFG+
Sbjct: 433 RGGAFSQTTEAETPFGF 449
>AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 157 bits (380), Expect = 1e-38
Identities = 82/173 (47%), Positives = 115/173 (66%), Gaps = 4/173 (2%)
Frame = +2
Query: 2 DKIRIVLNKADMIDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDEPLRYDVNRRLF 181
DKIRIVLNK+DM+DHQQLMRVYGALMWSLGKV +TPEV+RVY+GSFWD PL YD+NRRLF
Sbjct: 443 DKIRIVLNKSDMVDHQQLMRVYGALMWSLGKVFKTPEVSRVYLGSFWDHPLHYDLNRRLF 502
Query: 182 EDEEQDLFKDMQSLPXXXXXXXXXXXXXEHDLLRFMHT*SMS*GKRCLQCLVKIPKRKI* 361
+DE+ DLF+D+Q+LP L + +H ++ ++ + ++ K+K
Sbjct: 503 QDEQHDLFQDLQALPRNAALRKLNDLIKRARLAK-VHAYIIAELRKQMPSMIGKDKKK-- 559
Query: 362 SRILVRFMIK-YKESSKYHRET---FQILKKCKRPWANHDFTKFHPLKPKLLE 508
+ L++ + K Y++ + H + F + K + DF+KF+PLKPKLLE
Sbjct: 560 -KDLIQNLDKIYEQLQREHNISPGDFPDVNKMREKLQTQDFSKFNPLKPKLLE 611
Score = 155 bits (377), Expect = 2e-38
Identities = 75/137 (54%), Positives = 100/137 (72%), Gaps = 6/137 (4%)
Frame = +1
Query: 256 LIKRARLAKVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPGDFPDI 435
LIKRARLAKVHAYI+ ELRK+MPSM GKD KKKDLI+NL ++Y+++QRE ISPGDFPD+
Sbjct: 528 LIKRARLAKVHAYIIAELRKQMPSMIGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPDV 587
Query: 436 KKMQETLGQS*LHQVSPLETQVARIVDHMLATDIARLMDMIPQEDI------NIVSEPLI 597
KM+E L + +PL+ ++ +VD MLATDIARLM IP+E+ N ++P +
Sbjct: 588 NKMREKLQTQDFSKFNPLKPKLLEVVDGMLATDIARLMAQIPKEEAAAPAGSNGSADPTV 647
Query: 598 KGGAFEGVEDQVSPFGY 648
+GGAF + +PFG+
Sbjct: 648 RGGAFSQTTEAETPFGF 664
>AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform e protein.
Length = 613
Score = 157 bits (380), Expect = 1e-38
Identities = 82/173 (47%), Positives = 115/173 (66%), Gaps = 4/173 (2%)
Frame = +2
Query: 2 DKIRIVLNKADMIDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDEPLRYDVNRRLF 181
DKIRIVLNK+DM+DHQQLMRVYGALMWSLGKV +TPEV+RVY+GSFWD PL YD+NRRLF
Sbjct: 270 DKIRIVLNKSDMVDHQQLMRVYGALMWSLGKVFKTPEVSRVYLGSFWDHPLHYDLNRRLF 329
Query: 182 EDEEQDLFKDMQSLPXXXXXXXXXXXXXEHDLLRFMHT*SMS*GKRCLQCLVKIPKRKI* 361
+DE+ DLF+D+Q+LP L + +H ++ ++ + ++ K+K
Sbjct: 330 QDEQHDLFQDLQALPRNAALRKLNDLIKRARLAK-VHAYIIAELRKQMPSMIGKDKKK-- 386
Query: 362 SRILVRFMIK-YKESSKYHRET---FQILKKCKRPWANHDFTKFHPLKPKLLE 508
+ L++ + K Y++ + H + F + K + DF+KF+PLKPKLLE
Sbjct: 387 -KDLIQNLDKIYEQLQREHNISPGDFPDVNKMREKLQTQDFSKFNPLKPKLLE 438
Score = 155 bits (377), Expect = 2e-38
Identities = 75/137 (54%), Positives = 100/137 (72%), Gaps = 6/137 (4%)
Frame = +1
Query: 256 LIKRARLAKVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPGDFPDI 435
LIKRARLAKVHAYI+ ELRK+MPSM GKD KKKDLI+NL ++Y+++QRE ISPGDFPD+
Sbjct: 355 LIKRARLAKVHAYIIAELRKQMPSMIGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPDV 414
Query: 436 KKMQETLGQS*LHQVSPLETQVARIVDHMLATDIARLMDMIPQEDI------NIVSEPLI 597
KM+E L + +PL+ ++ +VD MLATDIARLM IP+E+ N ++P +
Sbjct: 415 NKMREKLQTQDFSKFNPLKPKLLEVVDGMLATDIARLMAQIPKEEAAAPAGSNGSADPTV 474
Query: 598 KGGAFEGVEDQVSPFGY 648
+GGAF + +PFG+
Sbjct: 475 RGGAFSQTTEAETPFGF 491
>AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 157 bits (380), Expect = 1e-38
Identities = 82/173 (47%), Positives = 115/173 (66%), Gaps = 4/173 (2%)
Frame = +2
Query: 2 DKIRIVLNKADMIDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDEPLRYDVNRRLF 181
DKIRIVLNK+DM+DHQQLMRVYGALMWSLGKV +TPEV+RVY+GSFWD PL YD+NRRLF
Sbjct: 492 DKIRIVLNKSDMVDHQQLMRVYGALMWSLGKVFKTPEVSRVYLGSFWDHPLHYDLNRRLF 551
Query: 182 EDEEQDLFKDMQSLPXXXXXXXXXXXXXEHDLLRFMHT*SMS*GKRCLQCLVKIPKRKI* 361
+DE+ DLF+D+Q+LP L + +H ++ ++ + ++ K+K
Sbjct: 552 QDEQHDLFQDLQALPRNAALRKLNDLIKRARLAK-VHAYIIAELRKQMPSMIGKDKKK-- 608
Query: 362 SRILVRFMIK-YKESSKYHRET---FQILKKCKRPWANHDFTKFHPLKPKLLE 508
+ L++ + K Y++ + H + F + K + DF+KF+PLKPKLLE
Sbjct: 609 -KDLIQNLDKIYEQLQREHNISPGDFPDVNKMREKLQTQDFSKFNPLKPKLLE 660
Score = 155 bits (377), Expect = 2e-38
Identities = 75/137 (54%), Positives = 100/137 (72%), Gaps = 6/137 (4%)
Frame = +1
Query: 256 LIKRARLAKVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPGDFPDI 435
LIKRARLAKVHAYI+ ELRK+MPSM GKD KKKDLI+NL ++Y+++QRE ISPGDFPD+
Sbjct: 577 LIKRARLAKVHAYIIAELRKQMPSMIGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPDV 636
Query: 436 KKMQETLGQS*LHQVSPLETQVARIVDHMLATDIARLMDMIPQEDI------NIVSEPLI 597
KM+E L + +PL+ ++ +VD MLATDIARLM IP+E+ N ++P +
Sbjct: 637 NKMREKLQTQDFSKFNPLKPKLLEVVDGMLATDIARLMAQIPKEEAAAPAGSNGSADPTV 696
Query: 598 KGGAFEGVEDQVSPFGY 648
+GGAF + +PFG+
Sbjct: 697 RGGAFSQTTEAETPFGF 713
>AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform c protein.
Length = 589
Score = 157 bits (380), Expect = 1e-38
Identities = 82/173 (47%), Positives = 115/173 (66%), Gaps = 4/173 (2%)
Frame = +2
Query: 2 DKIRIVLNKADMIDHQQLMRVYGALMWSLGKVLQTPEVARVYIGSFWDEPLRYDVNRRLF 181
DKIRIVLNK+DM+DHQQLMRVYGALMWSLGKV +TPEV+RVY+GSFWD PL YD+NRRLF
Sbjct: 246 DKIRIVLNKSDMVDHQQLMRVYGALMWSLGKVFKTPEVSRVYLGSFWDHPLHYDLNRRLF 305
Query: 182 EDEEQDLFKDMQSLPXXXXXXXXXXXXXEHDLLRFMHT*SMS*GKRCLQCLVKIPKRKI* 361
+DE+ DLF+D+Q+LP L + +H ++ ++ + ++ K+K
Sbjct: 306 QDEQHDLFQDLQALPRNAALRKLNDLIKRARLAK-VHAYIIAELRKQMPSMIGKDKKK-- 362
Query: 362 SRILVRFMIK-YKESSKYHRET---FQILKKCKRPWANHDFTKFHPLKPKLLE 508
+ L++ + K Y++ + H + F + K + DF+KF+PLKPKLLE
Sbjct: 363 -KDLIQNLDKIYEQLQREHNISPGDFPDVNKMREKLQTQDFSKFNPLKPKLLE 414
Score = 155 bits (377), Expect = 2e-38
Identities = 75/137 (54%), Positives = 100/137 (72%), Gaps = 6/137 (4%)
Frame = +1
Query: 256 LIKRARLAKVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQISPGDFPDI 435
LIKRARLAKVHAYI+ ELRK+MPSM GKD KKKDLI+NL ++Y+++QRE ISPGDFPD+
Sbjct: 331 LIKRARLAKVHAYIIAELRKQMPSMIGKDKKKKDLIQNLDKIYEQLQREHNISPGDFPDV 390
Query: 436 KKMQETLGQS*LHQVSPLETQVARIVDHMLATDIARLMDMIPQEDI------NIVSEPLI 597
KM+E L + +PL+ ++ +VD MLATDIARLM IP+E+ N ++P +
Sbjct: 391 NKMREKLQTQDFSKFNPLKPKLLEVVDGMLATDIARLMAQIPKEEAAAPAGSNGSADPTV 450
Query: 598 KGGAFEGVEDQVSPFGY 648
+GGAF + +PFG+
Sbjct: 451 RGGAFSQTTEAETPFGF 467
>U23519-8|AAK31503.3| 734|Caenorhabditis elegans Hypothetical
protein F26G1.6 protein.
Length = 734
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 453 PGPIMTSPSFTP*NPSC*NSGPHA-GNGHCTAHGYDSTGGHQHCQ*TSDKGW 605
P I+ P F P P+ N G G GH HGYD G Q+ + +GW
Sbjct: 540 PAGILQFPMFVPDAPAFSNYGAIGMGIGHEITHGYDDLGA-QYDDKGNLRGW 590
>U97005-10|AAK72084.1| 646|Caenorhabditis elegans Hypothetical
protein F19F10.12 protein.
Length = 646
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 478 VSPLETQVARIVDHMLATDIARLMDMIPQE 567
V +ET R VDH+L T ++RL+D +E
Sbjct: 238 VKLMETAPLRAVDHILVTSLSRLVDTTAKE 267
>U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protein
1, isoform b protein.
Length = 521
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 365 RILVRFMIKYKESSKYHRETFQI 433
RIL+ +M++ ES K HRETF +
Sbjct: 260 RILIDWMMEVCESEKLHRETFHL 282
>U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protein
1, isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 365 RILVRFMIKYKESSKYHRETFQI 433
RIL+ +M++ ES K HRETF +
Sbjct: 263 RILIDWMMEVCESEKLHRETFHL 285
>AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 365 RILVRFMIKYKESSKYHRETFQI 433
RIL+ +M++ ES K HRETF +
Sbjct: 263 RILIDWMMEVCESEKLHRETFHL 285
>AF098991-1|AAC67449.2| 758|Caenorhabditis elegans Hypothetical
protein F59H5.1 protein.
Length = 758
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/54 (24%), Positives = 31/54 (57%)
Frame = +1
Query: 247 TKRLIKRARLAKVHAYIVNELRKEMPSMFGKDSKKKDLIKNLGQVYDKIQREQQ 408
TK K+ ++ +++NE R + P G+ +KK+ + ++ + +++ +RE Q
Sbjct: 72 TKDFFKKDESLQLFRFVLNECRSQKPGRVGRVAKKRVGVNSM-KYWERYKREIQ 124
>AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 365 RILVRFMIKYKESSKYHRETFQI 433
RIL+ +M++ ES K HRETF +
Sbjct: 263 RILIDWMMEVCESEKLHRETFHL 285
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical
protein C50C3.2 protein.
Length = 2107
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +2
Query: 371 LVRFMIKYKESSKYHRETFQILKKCKRPWANHDFTKFHPLKPKLLE*WTTCWQRTLHGSW 550
+V +++K KES + +E F ++KC W T L P + T+ +++ +H +W
Sbjct: 108 IVDWILKIKESDESGKEIFDEIRKCSMVWNEISATFQQMLDPTATD--TSNYEK-VHETW 164
>AC006832-5|AAF39998.1| 513|Caenorhabditis elegans Hypothetical
protein ZK355.1 protein.
Length = 513
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 478 LGEVMIGPGSLAFF*YLESLPVIFAALFV 392
+G VMIGPG F L+ L V+F +L +
Sbjct: 377 IGNVMIGPGDEEFVYKLKELEVLFGSLTI 405
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,990,451
Number of Sequences: 27780
Number of extensions: 370463
Number of successful extensions: 994
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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