Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30938
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1228 - 25009736-25010965                                         30   0.86 
01_06_1580 - 38406740-38407257,38407481-38407552,38408309-384083...    28   3.5  
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378...    27   6.0  

>07_03_1228 - 25009736-25010965
          Length = 409

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 7   YKCQSCNRIGQYSCLRCKTCFCEEHV 84
           + C+ C + G  +C RCK+C    HV
Sbjct: 24  FNCKVCTKPGDTTCYRCKSCKFSIHV 49


>01_06_1580 -
           38406740-38407257,38407481-38407552,38408309-38408365,
           38408476-38408532,38408643-38408699,38408809-38408865,
           38409371-38409424,38409744-38409800,38410023-38410076,
           38412208-38412220,38413530-38413580,38414134-38414193,
           38414640-38414761,38415033-38415894,38416468-38416667,
           38417159-38417238,38417525-38417619
          Length = 821

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 1   ETYKCQSCNRIGQYSCLRC 57
           E +KC SC R  +Y CL C
Sbjct: 59  ELHKCVSCKRNSEYHCLCC 77


>03_04_0013 +
           16436438-16436536,16437257-16437742,16437791-16437826,
           16437835-16438323,16438951-16439622
          Length = 593

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 4   TYKCQSCNRIGQYSCLRCKTCFCEEH 81
           TY C  C+ +G     RCK C  + H
Sbjct: 533 TYGCDGCDEMGDSWSYRCKECDFDLH 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,867,357
Number of Sequences: 37544
Number of extensions: 115259
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)