Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30938
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1070| Best HMM Match : NOA36 (HMM E-Value=0.012)                    53   1e-07
SB_471| Best HMM Match : Laminin_EGF (HMM E-Value=0)                   29   2.0  
SB_53535| Best HMM Match : zf-C2H2 (HMM E-Value=4.8e-32)               23   4.4  
SB_32746| Best HMM Match : Lentiviral_Tat (HMM E-Value=6.8)            27   8.2  

>SB_1070| Best HMM Match : NOA36 (HMM E-Value=0.012)
          Length = 148

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 24/48 (50%), Positives = 28/48 (58%)
 Frame = +1

Query: 64  CFCEEHVXXXXXXXXXXXXXPPCPKCSYPTALTADLSMSTRSHRYGRQ 207
           CFCE+HV             P CPKC + T  T +LSMSTR+H YGRQ
Sbjct: 13  CFCEDHVRRKGVKYTRGQAIP-CPKCGHDTKETKELSMSTRTHAYGRQ 59


>SB_471| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 587

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 1   ETYKCQSCNRIGQYSCLRCKTCFC 72
           E  KC  C R+G Y   RCK C C
Sbjct: 458 EGLKCDQC-RVGYYDFPRCKQCGC 480


>SB_53535| Best HMM Match : zf-C2H2 (HMM E-Value=4.8e-32)
          Length = 323

 Score = 23.4 bits (48), Expect(2) = 4.4
 Identities = 12/51 (23%), Positives = 16/51 (31%)
 Frame = +1

Query: 40  YSCLRCKTCFCEEHVXXXXXXXXXXXXXPPCPKCSYPTALTADLSMSTRSH 192
           Y C +C   F                    C +CS   A + DL    R+H
Sbjct: 271 YKCTQCSRAFVRSTDLQRHLRNHTGEKPYKCKECSRAFARSTDLKRHMRTH 321



 Score = 23.0 bits (47), Expect(2) = 4.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 4   TYKCQSCNRIGQYSC 48
           T+KC  C++  QY C
Sbjct: 242 TWKCSFCSKAFQYPC 256


>SB_32746| Best HMM Match : Lentiviral_Tat (HMM E-Value=6.8)
          Length = 171

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 23  VTALGSTRVSAAKRASVRSTCGGAAC 100
           +T LG  R+  +    +RS CGG  C
Sbjct: 115 LTILGPKRIGRSPSPYIRSACGGRVC 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,286,615
Number of Sequences: 59808
Number of extensions: 135294
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)