Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30938
         (486 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   7.3  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    22   9.7  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    22   9.7  

>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 4   TYKCQSCNRIGQYSCLRCK 60
           TYKC  C   G Y   RC+
Sbjct: 517 TYKCGICECDGTYHGQRCE 535


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 61  FCSGDTSTAQCG 26
           FC+GD   A CG
Sbjct: 594 FCNGDNRPADCG 605


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 153 RAHGRPLHVHPFSSLRKTRHY 215
           R HG P H+H   S    RH+
Sbjct: 414 RLHGSPTHLHNHRSGGGGRHH 434


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,937
Number of Sequences: 2352
Number of extensions: 4654
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 42708759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)