Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30938
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr...    27   5.5  
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase...    27   5.5  
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi...    27   5.5  
U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav (...    27   7.2  
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (...    27   7.2  
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.      27   7.2  

>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
           protein ZK1067.1 protein.
          Length = 1323

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 10  KCQSCNRIGQYSCLRCK 60
           +C++CN +G+  CL C+
Sbjct: 573 ECETCNGLGELDCLTCR 589


>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
           protein.
          Length = 1323

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 10  KCQSCNRIGQYSCLRCK 60
           +C++CN +G+  CL C+
Sbjct: 573 ECETCNGLGELDCLTCR 589


>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
           kinase protein.
          Length = 1374

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 10  KCQSCNRIGQYSCLRCK 60
           +C++CN +G+  CL C+
Sbjct: 624 ECETCNGLGELDCLTCR 640


>U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform a protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 7   YKCQSCNRIGQYSCLRCKTC 66
           YKC+SCN      CL  K C
Sbjct: 611 YKCESCNMSMHKECLGLKKC 630


>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform b protein.
          Length = 1007

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 7   YKCQSCNRIGQYSCLRCKTC 66
           YKC+SCN      CL  K C
Sbjct: 643 YKCESCNMSMHKECLGLKKC 662


>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
          Length = 1007

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 7   YKCQSCNRIGQYSCLRCKTC 66
           YKC+SCN      CL  K C
Sbjct: 643 YKCESCNMSMHKECLGLKKC 662


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,426,792
Number of Sequences: 27780
Number of extensions: 96361
Number of successful extensions: 340
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)