Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30938
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.2  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 13  CQSCNRIGQYSCLRCKTCFCEE 78
           C S    G+YSCL+    F  E
Sbjct: 219 CNSKTNTGEYSCLKVDLLFKRE 240


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 13  CQSCNRIGQYSCLRCKTCFCEE 78
           C S    G+YSCL+    F  E
Sbjct: 219 CNSKTNTGEYSCLKVDLLFKRE 240


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 428  MYQVLRHCLYNNKC 469
            MY+ L HC  N +C
Sbjct: 1688 MYEELNHCAPNRRC 1701


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 136 KCSYPTALTADLSMSTRSHRYGRQGTTP 219
           + S PT+ T  ++ S R  RY      P
Sbjct: 86  EASQPTSTTTSVTPSCRRQRYNIAAANP 113


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 130 CPKCSYPTALTADLSMSTRSH 192
           C KCSY     + L+   +SH
Sbjct: 19  CEKCSYSCVNKSMLNSHLKSH 39


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 429 IKVHSGSRLPFSLFI 385
           I +  G R PFSLFI
Sbjct: 72  IPMQLGRRQPFSLFI 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,842
Number of Sequences: 438
Number of extensions: 1383
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)