Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30937
         (599 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    26   0.28 
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    23   2.0  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -2

Query: 430 FVLAFSAFFLWMYSMSTRLFLNTLPFAFM*SEWYRCLSIFLAVLYFRSNFLKTLCLCTQV 251
           + L FS    ++     + F +++   F  SE +  +++     YFR +  KT   CT V
Sbjct: 353 YTLVFSVLKQYVMQQQVKNFRHSVRSVFFLSEIFGLVNLKYRETYFRLSKTKT--FCTLV 410

Query: 250 PSVAY 236
            ++ Y
Sbjct: 411 TALVY 415



 Score = 25.0 bits (52), Expect = 0.49
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 271 LCLCTQVPSVAYAHWLYLFSYQ-SHSDDPFYVLLCFC 164
           +C+  Q   +A+ H LY+F     ++ D FY+    C
Sbjct: 618 ICVIVQSEQIAWLHLLYIFLVGIMYAADVFYICHVCC 654


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 114 ILDHLTDVLSGVGVCDLI 61
           IL H+    SG+ +CDLI
Sbjct: 252 ILWHIVGTFSGIFLCDLI 269


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,256
Number of Sequences: 336
Number of extensions: 3035
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)