Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30937
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 132 5e-32
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 132 5e-32
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.52
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.69
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 28 1.2
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 27 2.8
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 26 3.7
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 6.4
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 8.5
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 8.5
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 8.5
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 25 8.5
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 132 bits (318), Expect = 5e-32
Identities = 57/81 (70%), Positives = 71/81 (87%)
Frame = +1
Query: 1 LAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEA 180
LAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR R+RK A
Sbjct: 10 LAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAA 69
Query: 181 RRKGRHCGFGKRRGTANARMP 243
+R GRH G+GKR+GTA ARMP
Sbjct: 70 KRLGRHTGYGKRKGTAEARMP 90
Score = 68.1 bits (159), Expect = 9e-13
Identities = 28/45 (62%), Positives = 38/45 (84%)
Frame = +3
Query: 312 KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 446
KID+HLYH+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 114 KIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 132 bits (318), Expect = 5e-32
Identities = 57/81 (70%), Positives = 71/81 (87%)
Frame = +1
Query: 1 LAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEA 180
LAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR R+RK A
Sbjct: 10 LAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAA 69
Query: 181 RRKGRHCGFGKRRGTANARMP 243
+R GRH G+GKR+GTA ARMP
Sbjct: 70 KRLGRHTGYGKRKGTAEARMP 90
Score = 68.5 bits (160), Expect = 7e-13
Identities = 36/80 (45%), Positives = 50/80 (62%)
Frame = +3
Query: 312 KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQC*GPPQ*SEGGTQAP 491
KID+HLYH+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q ++ Q
Sbjct: 114 KIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQR- 172
Query: 492 RGTYCRKKEELLQTFAREDE 551
R +K E L T A + E
Sbjct: 173 RAKAVEEKREQLYTAAEKIE 192
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -3
Query: 117 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 28
+I +H++DV G+ V LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 28.7 bits (61), Expect = 0.69
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 96 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 1
+VLS + ++D + PHLL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 152 ALVSAKTQKHVERVVTVALVREEVQPMRVCHRR 250
++V K K E+++ AL RE V+P R H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = -2
Query: 514 FLRQYVPRGACVPPSLYCGGPQHWSLSIFVLAFSAFFLWMYSMSTRLFLNTLPFAFM-*S 338
FL +P G P G S + AF LW+YS+ L+L +
Sbjct: 303 FLSSAMPPGLRFPAVNILGDNLILSGIYLTSSRQAFVLWVYSLDKELWLQLDMLGVLNHG 362
Query: 337 EWYRCL 320
W++CL
Sbjct: 363 SWFKCL 368
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = -2
Query: 442 SLSIFVLAFSAFFLWMYSMSTRLFLNTLPFAFM*SEWYRCLSIFLAVLYFRSNFLKTLCL 263
S S+F+ S +S+S + + +P F+ + R LS+ AVL + S F+ L
Sbjct: 464 SKSLFISVVSTL---NFSLSFVVAILLVPLQFISFRFNRRLSLLFAVLTYFSTFIFLCSL 520
Query: 262 CTQVPSVAYAHWLYLFSYQ 206
+ WL+ Y+
Sbjct: 521 SKILNGPLVPFWLWAKEYE 539
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -1
Query: 272 PLSLYPSSFCG--IRALAVPLLLPKP 201
PL L PSS CG +R V L+ PKP
Sbjct: 142 PLKLIPSSLCGRLLRTTEV-LITPKP 166
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = +1
Query: 34 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 180
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 181 RRKGR 195
R+ R
Sbjct: 349 RKSLR 353
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 88 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 204
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 229 WLYLFSYQSHSDDPFYVLLCFCGHERGS 146
W Y+S D FY ++ F H RGS
Sbjct: 824 WGETMVYESIISDDFYSMIRFLVHHRGS 851
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 473 FTLLRRASALVAKHLRPGLLSLLPVDVLHEHTLVLEHI 360
FTL R+A+ ++AKHL P +L + H+ V H+
Sbjct: 437 FTLRRKAN-ILAKHLPPRTDIVLFIKPTHQQENVYGHV 473
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,166
Number of Sequences: 5004
Number of extensions: 47400
Number of successful extensions: 148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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