Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30937
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 131 4e-31
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 130 8e-31
07_03_1639 + 28305801-28305958,28306240-28306249 33 0.17
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 31 0.53
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 31 0.53
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 2.8
02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106... 29 3.8
02_01_0360 - 2594534-2594601,2594778-2594829,2594915-2595029,259... 29 3.8
01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416 29 3.8
04_03_0266 + 13648287-13649099,13649186-13649524 28 5.0
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 28 6.6
09_06_0281 + 22014394-22015534,22016041-22017056 28 6.6
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942 28 6.6
10_08_0781 + 20509033-20509714,20510048-20510191,20510604-205107... 27 8.7
07_03_1020 + 23344657-23346969 27 8.7
02_05_0067 + 25557975-25558553 27 8.7
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 27 8.7
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 131 bits (317), Expect = 4e-31
Identities = 57/85 (67%), Positives = 71/85 (83%)
Frame = +1
Query: 1 LAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEA 180
LAASV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR+R R+ EA
Sbjct: 10 LAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRAHEA 69
Query: 181 RRKGRHCGFGKRRGTANARMPQKEL 255
++KGRH G+GKRRGT AR+P K L
Sbjct: 70 KQKGRHSGYGKRRGTREARLPTKIL 94
Score = 82.6 bits (195), Expect = 2e-16
Identities = 36/47 (76%), Positives = 41/47 (87%)
Frame = +3
Query: 306 AKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 446
AKKID+H+YH +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 112 AKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 130 bits (314), Expect = 8e-31
Identities = 56/85 (65%), Positives = 71/85 (83%)
Frame = +1
Query: 1 LAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEA 180
LA+SV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR+R R+ EA
Sbjct: 10 LASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSRARRAHEA 69
Query: 181 RRKGRHCGFGKRRGTANARMPQKEL 255
++KGRH G+GKRRGT AR+P K L
Sbjct: 70 KQKGRHSGYGKRRGTREARLPTKIL 94
Score = 82.6 bits (195), Expect = 2e-16
Identities = 36/47 (76%), Positives = 41/47 (87%)
Frame = +3
Query: 306 AKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 446
AKKID+H+YH +YMK KGN+FKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 112 AKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 345 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 446
MK KGN+ NKR + +AEKAR + LSDQ
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQ 34
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 28 KKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRARVRKNTEARRKGRH 198
K W D E+N + + R + KM+ D LV+ +A H + T RKGR
Sbjct: 761 KGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRNDEETTSISRKGRA 818
Query: 199 CGFG 210
GFG
Sbjct: 819 QGFG 822
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 31.5 bits (68), Expect = 0.53
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +1
Query: 28 KKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRARVRKNTEARRKGRH 198
K W D E+N + + R + KM+ D LV+ +A H + T RKGR
Sbjct: 712 KGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRNDEETTSISRKGRA 769
Query: 199 CGFG 210
GFG
Sbjct: 770 QGFG 773
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 58 INEIANTNSRQNIRKMIKDGLVIK-KPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 231
+ E N NS + + GL+ + KP+ V S RVR + K GK R TAN
Sbjct: 198 LGEANNDNSEKLEELFLDKGLLDELKPIRVESGKRVRASIRIIEKMMSSRVGKIRNTAN 256
>02_03_0297 -
17408902-17409045,17409134-17409304,17410563-17410664,
17412605-17412718,17413095-17413178,17413669-17413808,
17414429-17414560,17415430-17415618,17415736-17415801,
17415905-17415938
Length = 391
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 493 RGACVPPSLYCGGPQH 446
+GACV P YCG P H
Sbjct: 152 KGACVDPVAYCGTPLH 167
>02_01_0360 -
2594534-2594601,2594778-2594829,2594915-2595029,
2595124-2595212,2595326-2595391,2595468-2595657,
2595811-2596037,2596111-2596185,2596283-2596354,
2596507-2596577,2596848-2597036,2597186-2597298,
2598063-2598268
Length = 510
Score = 28.7 bits (61), Expect = 3.8
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Frame = -2
Query: 451 QHWSLSIFVLAFSAFFLWMYSMSTRLFLNTLPFAFM*SEWYRCLSIFLAVLYFRSNFLKT 272
Q+W++S+ L+ AFF+W S N A S++ L I + Y LKT
Sbjct: 114 QYWAVSVSCLSMLAFFVWHLRQSPS---NGNSIA---SKYGLLLIILYPLAYLFHLLLKT 167
Query: 271 --LCLCTQVPSVAYAHWLYLFSYQSHSDDPFY---VLLCFCG 161
C+C ++ + Y S+ + PF+ VL +CG
Sbjct: 168 DGDCICLDFRAI-HTIASYPTSFHAGMGRPFWSQVVLFLYCG 208
>01_05_0450 + 22357006-22357323,22357365-22357713,22358175-22358416
Length = 302
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 115 GLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTA 228
G+ +K+ H + + R+GRH G+G+RR +A
Sbjct: 212 GITLKEDEKQHGTSSSAADGGGLRRGRHDGWGRRRSSA 249
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 28 KKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 174
K+K+ L +E ++ T R+ RK+ K + KK + H ++RK++
Sbjct: 320 KRKLVLSDDEGDDAEKTRDRETTRKLPKQA-IPKKKTSSHPMPKIRKSS 367
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 43 LDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVH 147
LDP +NE N R NI IKD L ++ +H
Sbjct: 628 LDPAVVNETTLKNDRANIVDYIKDCLFARQRQGLH 662
>09_06_0281 + 22014394-22015534,22016041-22017056
Length = 718
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -3
Query: 144 YCYRFLDDETILDHLTDVLSGVGVCDLID 58
Y YR DDE+++ H T +L+ + D++D
Sbjct: 657 YSYRSPDDESLVTHFTALLTQGNLGDILD 685
>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
Length = 379
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 109 KDGLVIKKPVAVHSRARVRKNTEARRKGRHC---GFGKRRGTANAR 237
KDG ++ + +RA R +T+A R+ HC G+G RR + R
Sbjct: 174 KDGRNLQAGAQLCARAASRGHTDALRELGHCVSDGYGVRRSLSGGR 219
>10_08_0781 +
20509033-20509714,20510048-20510191,20510604-20510719,
20511356-20511520,20511822-20512043,20512613-20512735
Length = 483
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 40 WLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGK 213
++D N+ + + +SR ++ ++ GL +K PV + VR E GR G G+
Sbjct: 29 YVDGNDTEDCYSGSSRASLAGALRQGLNLKSPVLGYKTPNVR---ELYTLGRELGQGQ 83
>07_03_1020 + 23344657-23346969
Length = 770
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 511 LRQYVPRGACVPPSLYCGGPQHWSLSIFVLAFS 413
LR +VP A P+L GGP + + FV+AF+
Sbjct: 647 LRVFVPDTAGCAPALPGGGPANLNYPSFVVAFN 679
>02_05_0067 + 25557975-25558553
Length = 192
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 381 HACS*THYPSPSCRVSGIDACQSSW 307
H C H P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 28 KKKVWLDPN-EINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRK 189
K KVW P E+ + +R + +K + +KP A R RVRK TEA K
Sbjct: 681 KPKVWSRPRKEVEPVGKPKARGHPKKQAEPD---EKPKA---RGRVRKTTEANGK 729
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,448,679
Number of Sequences: 37544
Number of extensions: 334038
Number of successful extensions: 988
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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