Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30937
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              147   5e-36
SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)                    30   1.2  
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4)                     29   3.8  
SB_49745| Best HMM Match : A2M_comp (HMM E-Value=0)                    28   5.0  
SB_56495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_10493| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)                27   8.8  
SB_18612| Best HMM Match : DUF1186 (HMM E-Value=2.4)                   27   8.8  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  147 bits (357), Expect = 5e-36
 Identities = 66/85 (77%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   LAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEA 180
           LAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  VHSRARVRK  EA
Sbjct: 38  LAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIVHSRARVRKADEA 97

Query: 181 RRKGRHCGFGKRRGTANARMPQKEL 255
           R KGRH G GKR+GTANARMPQK +
Sbjct: 98  RSKGRHSGHGKRKGTANARMPQKTI 122



 Score =  101 bits (242), Expect = 4e-22
 Identities = 47/82 (57%), Positives = 62/82 (75%)
 Frame = +3

Query: 306 AKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQC*GPPQ*SEGGTQ 485
           AKKID H+YHSLYMK+KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQ       ++   Q
Sbjct: 140 AKKIDNHMYHSLYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQ 199

Query: 486 APRGTYCRKKEELLQTFAREDE 551
                  +K++++L  +A+E+E
Sbjct: 200 RRDDRMEQKRKDMLSAYAKEEE 221


>SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)
          Length = 400

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -3

Query: 246 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 79
           L++TR+ C SSL    VT  S  + V      G+Y  R   D  +   L  VL G+
Sbjct: 108 LYNTRVTCDSSLYNTRVTCDSRMYLVLLTVLPGLYNTRVTCDSRMYLVLLTVLPGL 163


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 151 RARVRKNTEARRKGRHCGFGKRRGTANAR 237
           +A  RK    RR+ R  G  K+R TANAR
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANAR 45


>SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4)
          Length = 177

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 246 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 79
           L++TR+ C S L  A VT  S  + V      G+Y  R   D  +   +  VL G+
Sbjct: 68  LYNTRVTCGSRLYNARVTCDSRMYLVLLTVLQGLYNTRVTCDSRMYLVILTVLPGL 123


>SB_49745| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1079

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 160  VRKNTEARRKGRHCGFGKRRGTANARMPQKELGYKDK 270
            +R+N +  +K + C  GKR+     + P+K  G K K
Sbjct: 890  MRRNGKKNKKNKKCKHGKRKNGKCRKRPKKGKGKKGK 926


>SB_56495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 475 PSLYCGGPQHWSLSIFVLAFSAFFLWMYSMSTRLF 371
           P+LY     HW+ +I  L ++A  L+M  M+ +LF
Sbjct: 88  PALYKNSKNHWNKTIHGLIYNALKLFM-EMNQKLF 121


>SB_10493| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)
          Length = 119

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = -3

Query: 363 HYPSPSCRVSGIDACQSSWQFCTSGAIFLKPFVFVPKFLLWHTRIGCTSSLTKATVTTLS 184
           H   P   +  + ACQ ++  C S ++FL         +L    +  T       VT L 
Sbjct: 41  HSLDPCACICHVSACQRAFVTCLSVSVFLSRVNLSRVCVLVSVSVSVTCVNLYLPVTCLR 100

Query: 183 TCFCV 169
            C C+
Sbjct: 101 ACVCL 105


>SB_18612| Best HMM Match : DUF1186 (HMM E-Value=2.4)
          Length = 692

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = -2

Query: 325 CLSIFLAVLYFRSNFLKTLCLCTQVPSVAYAHWLYLFSYQSHSDDPFYVLLCFCG-HERG 149
           CL + +A LY+ S  L ++    Q P+   A     FS   H  D      CF G H+R 
Sbjct: 289 CLQVAIAALYYNSPLLLSILDKLQFPNSQEAVTAQFFSQWVHDAD------CFLGLHDRK 342

Query: 148 SVLL 137
             +L
Sbjct: 343 MFIL 346


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,789,738
Number of Sequences: 59808
Number of extensions: 381243
Number of successful extensions: 1167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)