Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30937
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   134   3e-32
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.48 
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  134 bits (325), Expect = 3e-32
 Identities = 57/85 (67%), Positives = 74/85 (87%)
 Frame = +1

Query: 1   LAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEA 180
           LA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR R R+  EA
Sbjct: 10  LASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEA 69

Query: 181 RRKGRHCGFGKRRGTANARMPQKEL 255
           RRKGRH G+GKRRGTANARMP+K L
Sbjct: 70  RRKGRHTGYGKRRGTANARMPEKTL 94



 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 34/82 (41%), Positives = 51/82 (62%)
 Frame = +3

Query: 306 AKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQC*GPPQ*SEGGTQ 485
           AKK+D+HLYH LY++AKGN FKNK+ L+EYI +KK E  R K L+DQ       ++   +
Sbjct: 112 AKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKNKESRK 171

Query: 486 APRGTYCRKKEELLQTFAREDE 551
                   K+ ELL+  ++ ++
Sbjct: 172 RREERQVVKRAELLRKISQSEK 193


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 70   ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 204
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 82  SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 195
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 189 LSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGVGVCDLIDFI 52
           ++T FC+FAD S   +  R  DD+  ++   +  SG  + D+I F+
Sbjct: 435 VNTIFCLFADASPAKWT-RLQDDDVAIEEEKEEYSG-SIEDIIKFL 478


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 502 YVPRGACVPPSLYCGGP---QHWSLSIFVLAFSAFFLWMYS 389
           +VP   C+  + Y  G    ++W+  IF +AFS    W +S
Sbjct: 185 FVPSSFCMAITFYILGAYLNENWTAGIFCVAFSTMVGWPFS 225


>AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8a protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 322 LSIFLAVLYFRSNFLK 275
           L++ LA++YFRSNF K
Sbjct: 8   LAVILAIIYFRSNFSK 23


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,654,539
Number of Sequences: 27780
Number of extensions: 280118
Number of successful extensions: 832
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)