Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30937
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.7  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   4.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 254  LGTKTKGFKKIAPEVQNCQED*QASIPLTLH 346
            L T+TKG K I PE     E   A+  +TLH
Sbjct: 1452 LNTRTKGSKPIIPEAARFIE--VATNSITLH 1480


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 328 RCLSIFLAVLYFRSNFLKTLCLCT-QVPSVA 239
           RC+ +FL+V+   S F+  +  C  + P  A
Sbjct: 6   RCIYLFLSVILITSYFVTPVMPCNCKAPETA 36


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 511 LRQYVPRGACVPPSLYCGGPQHWSLSIFVLAFSAFFLWMYSMS 383
           L   +P  +  PP++        +LS+F L  +A    M  MS
Sbjct: 301 LHWQLPHNSTNPPNILLYYRDSLALSVFALILTALLRKMQEMS 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,397
Number of Sequences: 438
Number of extensions: 3152
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)