Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30937
(599 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 126 1e-29
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 124 6e-29
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 123 1e-28
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 46 3e-05
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 3.1
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 4.1
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 28 4.1
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 5.4
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 27 7.2
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 27 7.2
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 7.2
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 7.2
At1g16370.1 68414.m01958 transporter-related low similarity to o... 27 7.2
At1g11880.1 68414.m01370 expressed protein contains Pfam profile... 27 7.2
At5g59500.1 68418.m07457 expressed protein 27 9.5
At1g23830.1 68414.m03006 expressed protein 27 9.5
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 126 bits (304), Expect = 1e-29
Identities = 55/85 (64%), Positives = 68/85 (80%)
Frame = +1
Query: 1 LAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEA 180
LAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR+R R EA
Sbjct: 10 LAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEA 69
Query: 181 RRKGRHCGFGKRRGTANARMPQKEL 255
+RKGRH G+GKR+GT AR+P K L
Sbjct: 70 KRKGRHSGYGKRKGTREARLPTKIL 94
Score = 82.2 bits (194), Expect = 2e-16
Identities = 36/47 (76%), Positives = 41/47 (87%)
Frame = +3
Query: 306 AKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 446
+KKIDRH+YH +YMK KGNVFKNKRVLME IH+ KAEKAR K L+DQ
Sbjct: 112 SKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQ 158
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 124 bits (298), Expect = 6e-29
Identities = 54/85 (63%), Positives = 68/85 (80%)
Frame = +1
Query: 1 LAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEA 180
LAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR+R RK A
Sbjct: 10 LAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIA 69
Query: 181 RRKGRHCGFGKRRGTANARMPQKEL 255
+ KGRH G+GKR+GT AR+P K L
Sbjct: 70 KMKGRHSGYGKRKGTREARLPTKVL 94
Score = 81.0 bits (191), Expect = 6e-16
Identities = 35/46 (76%), Positives = 40/46 (86%)
Frame = +3
Query: 309 KKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 446
KKID+H+YH +YM+ KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 113 KKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 123 bits (296), Expect = 1e-28
Identities = 52/85 (61%), Positives = 70/85 (82%)
Frame = +1
Query: 1 LAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEA 180
LA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR+R R+ A
Sbjct: 10 LASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIA 69
Query: 181 RRKGRHCGFGKRRGTANARMPQKEL 255
+RKGRH G+GKR+GT AR+P K L
Sbjct: 70 KRKGRHSGYGKRKGTREARLPTKVL 94
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/46 (80%), Positives = 40/46 (86%)
Frame = +3
Query: 309 KKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 446
KKIDRH+YH +YMK KGNVFKNKRVLME IH+ KAEKAR K LSDQ
Sbjct: 113 KKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +3
Query: 309 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 419
KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -2
Query: 445 WSLSIFVLAFSAFFLWMYSMSTRL 374
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 112 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 231
D + KK + + + ++RKN + RR+G G G RR A+
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +1
Query: 70 ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQK 249
A+ + RK ++ + + S R+N +R+ H G GKR + N+ ++
Sbjct: 303 ASNELNRTPRKQVQKKSALLRLETPRSYKNSRENEWSRQHNHHNGNGKRFNS-NSYRGKE 361
Query: 250 ELGYKDKGF*E 282
LG+ D+G E
Sbjct: 362 HLGHSDRGLVE 372
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 134 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 39
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 148 SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 255
SR+R R + +R +GR + R + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 259 TQVPSVAYAHWLYLFSYQS 203
++VP + YA WLY+ SY S
Sbjct: 207 SEVPLLPYARWLYISSYVS 225
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 306 AKKIDRHLYHSLYMKAKGNVFKNKRVL 386
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 112 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 225
D L++ H R+ VR+ R +GR G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853
>At1g16370.1 68414.m01958 transporter-related low similarity to
organic cation transporter OCTN1 from [Homo sapiens]
GI:2605501, [Mus musculus] GI:4126605, [Rattus
norvegicus] GI:5679326; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 521
Score = 27.5 bits (58), Expect = 7.2
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = -2
Query: 430 FVLAFSAFFLWMYSM---STRLFLNTLPFAFM*SEWYRCLSIF-LAVLYF--RSNFLKTL 269
F++ FS W Y++ S R+ P A M L L+ + F + + + L
Sbjct: 183 FIIGFSRSQTWSYALVLISERVSTRWRPRATMIPFTLFVLGFMSLSGIAFLAQDSSWRYL 242
Query: 268 CLCTQVPSVAYAHWLYLFSYQS 203
L T VP+V Y +LYLF+ +S
Sbjct: 243 YLYTSVPAVFYCIFLYLFALES 264
>At1g11880.1 68414.m01370 expressed protein contains Pfam profile
PF04188: Protein of unknown function (DUF409)
Length = 489
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 331 YRCLSIFLAVLYFRSNFLKTLCLCTQVPSVAYAHWLYLFSYQSHSDD 191
Y+ +LA+ F + FL+ +C+C +P VA+ + Y H+ D
Sbjct: 239 YQKRRAYLAMQVFIAGFLRCICIC--LPFVAFQAYGYYNICHGHTRD 283
>At5g59500.1 68418.m07457 expressed protein
Length = 396
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 481 VPPSLYCGGPQHWSLSIFVLAFSAFFLWMYSMSTRLF 371
VPP+ + G + W +F LA+ FF + S+ RL+
Sbjct: 196 VPPAYFNGYLEGWPY-VFFLAYHYFFFFNVSVRKRLY 231
>At1g23830.1 68414.m03006 expressed protein
Length = 345
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -2
Query: 490 GACVPPSLYCGGPQHWSLSIFVLAFSAFFLWMYSMST 380
G C+ SLY WS S+F+ F FFL S ST
Sbjct: 145 GGCLITSLYV---LLWSTSVFLFFFLFFFLQFLSGST 178
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,920,865
Number of Sequences: 28952
Number of extensions: 259968
Number of successful extensions: 727
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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