Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30934
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    26   0.35 
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    26   0.35 
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    23   3.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.8  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.6  

>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 363 FYLVQSIFFLNFTVNLIMTKY*VKSYINNKMFFKYL 470
           FY   S FF  FT   I+  Y  + YI+N +  + L
Sbjct: 239 FYFFISTFFYFFTTGNIIATYDKQFYIHNALIVRAL 274


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 363 FYLVQSIFFLNFTVNLIMTKY*VKSYINNKMFFKYL 470
           FY   S FF  FT   I+  Y  + YI+N +  + L
Sbjct: 235 FYFFISTFFYFFTTGNIIATYDKQFYIHNALIVRAL 270


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 235 QQICVEFTIHGMLKKKYKNY 176
           +Q+  +F   G+ KK+Y+NY
Sbjct: 97  EQLQKKFDPQGIYKKRYQNY 116


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 452  FIVNI*FNLVLCHYKVNSKI*EKYR 378
            F VN  F  ++C YK ++K  E+ R
Sbjct: 1079 FSVNKLFKCMICTYKADNKENEQLR 1103


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 452  FIVNI*FNLVLCHYKVNSKI*EKYR 378
            F VN  F  ++C YK ++K  E+ R
Sbjct: 1079 FSVNKLFKCMICTYKADNKENEQLR 1103


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 278 PAHSLSVQT*IKNETNIRVISKTGIN 355
           P+HS+   + +    NI+ +S++GIN
Sbjct: 348 PSHSIYPSSNLMPLNNIQNLSQSGIN 373


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,317
Number of Sequences: 336
Number of extensions: 2854
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)