Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30934
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.8  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   5.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.1  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   5.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 327 IFVSFFIYV*TLSEWAGPHNITKI 256
           + +SF   + TL E+AG H  TK+
Sbjct: 311 LLMSFGYCIATLLEFAGVHYFTKV 334


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/24 (29%), Positives = 19/24 (79%)
 Frame = +3

Query: 285 IHLVFKHK*RMKQILE*FQKRELI 356
           +HL+F+H  + +++L+ F++ +L+
Sbjct: 147 LHLLFRHFSQRQEVLQAFKQVQLL 170


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 712 CR-RFHF*VMPINKLILDKRFPANYLSDRSVIL 617
           CR + H   +  NKLI   RFP N   + S+ +
Sbjct: 148 CRPKIHVFSLHDNKLITMYRFPQNQFKESSLFV 180


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/24 (29%), Positives = 19/24 (79%)
 Frame = +3

Query: 285 IHLVFKHK*RMKQILE*FQKRELI 356
           +HL+F+H  + +++L+ F++ +L+
Sbjct: 115 LHLLFRHFSQRQEVLQAFKQVQLL 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,307
Number of Sequences: 438
Number of extensions: 3323
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)