Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30933
         (739 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    25   0.48 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.84 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.1  

>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 500 KPDVKCDPRSMGKYMGLPVCC 562
           KP V C P   G+  G  +CC
Sbjct: 43  KPCVSCGPGQSGQCFGPSICC 63


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
 Frame = +3

Query: 357 PSSRLTWCLTPVSTSHWSRTRQSSLP-RRPTMNSFPSPRSQTHAFEPRPNQM*NATP--- 524
           P+   T  L+  + +     R S  P +RP   S   P    H + P P+ +  ATP   
Sbjct: 244 PAVTATVQLSTCTRTTLKNNRASPYPMQRPKSASLSPP---PHVYNP-PDHIQQATPYSA 299

Query: 525 -GQWASTWACLYAVTVVTSLPQGC 593
            G   STW+ +   T V S    C
Sbjct: 300 PGPTYSTWSTVQTPTTVMSPTINC 323


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 348  WTSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPS 464
            W+S ++   W  T    +  +R   +S   RPT  ++P+
Sbjct: 1043 WSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPT 1081



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 387  PVSTSHWSRTRQSSLPRRPT 446
            P +T+HW     +S   RPT
Sbjct: 1177 PSTTNHWQTKTTTSTTTRPT 1196



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 246  YGGRCHRWLHC 214
            Y G C R+LHC
Sbjct: 1287 YPGDCTRYLHC 1297



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 449  EQLSVAEITNACFRAPAKPDVKC 517
            E+  +    N   R  AKPD KC
Sbjct: 2177 EEYPLLRTINRVLRGYAKPDPKC 2199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,481
Number of Sequences: 336
Number of extensions: 4523
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)